miRNA display CGI


Results 21 - 40 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 20113 0.67 0.348072
Target:  5'- gGGCGCCCCggcgacggggCUGGgGGGCgGGCgccgCGGGg -3'
miRNA:   3'- gCCGCGGGG----------GGCCgCCUG-CCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 20304 0.71 0.18689
Target:  5'- gGGCGCCCgCCgUGGCGuuGGCGGCggCGAGc -3'
miRNA:   3'- gCCGCGGG-GG-GCCGC--CUGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 20466 0.67 0.372535
Target:  5'- uGGCGCcgguCCCCCGggggggcGCGGGggucgucggcggcucUGGCUCGAu -3'
miRNA:   3'- gCCGCG----GGGGGC-------CGCCU---------------GCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 20633 0.68 0.28111
Target:  5'- gGGCGCCCCCUgGGCGGcACcagGGC-CGu- -3'
miRNA:   3'- gCCGCGGGGGG-CCGCC-UG---CCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 20752 0.7 0.214741
Target:  5'- cCGGCGCgCCUCCaccgcGGCGGACGcGCgccgggCGAGc -3'
miRNA:   3'- -GCCGCG-GGGGG-----CCGCCUGC-CGa-----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 21450 0.75 0.106872
Target:  5'- gGGUGgCCCCCGGCGGcguggucccgcgucGcCGGCUCGGg -3'
miRNA:   3'- gCCGCgGGGGGCCGCC--------------U-GCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 26375 0.81 0.035716
Target:  5'- gCGcGCGUCCCCCGGCGGGCGGCg---- -3'
miRNA:   3'- -GC-CGCGGGGGGCCGCCUGCCGagcuu -5'
29641 5' -67.3 NC_006151.1 + 28590 0.66 0.38481
Target:  5'- cCGGCGCgUCCCCggaGGCGGgugccgcGgGGUUCGAu -3'
miRNA:   3'- -GCCGCG-GGGGG---CCGCC-------UgCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 28871 0.66 0.38481
Target:  5'- cCGGCGCgUCCCCggaGGCGGgugccgcGgGGUUCGAu -3'
miRNA:   3'- -GCCGCG-GGGGG---CCGCC-------UgCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 30676 0.68 0.313238
Target:  5'- cCGGgaaGCcuCCCCCGGCGGGCGGgggggugUCGGGg -3'
miRNA:   3'- -GCCg--CG--GGGGGCCGCCUGCCg------AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 31219 0.67 0.370263
Target:  5'- aGGCcgGgCCCCCGGcCGGcCGGCccggCGAGc -3'
miRNA:   3'- gCCG--CgGGGGGCC-GCCuGCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 31327 0.66 0.41746
Target:  5'- aCGcGCGCCCaCCCucGGCGccGugGGCcCGAc -3'
miRNA:   3'- -GC-CGCGGG-GGG--CCGC--CugCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 31740 0.67 0.370263
Target:  5'- aGGCGCCCgCgCCGG-GGACGcGCcugCGGc -3'
miRNA:   3'- gCCGCGGG-G-GGCCgCCUGC-CGa--GCUu -5'
29641 5' -67.3 NC_006151.1 + 33224 0.72 0.154738
Target:  5'- gCGGgGCgCCCCGGCGGGCGGga-GGGg -3'
miRNA:   3'- -GCCgCGgGGGGCCGCCUGCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 33910 0.72 0.174194
Target:  5'- -cGCGCCUccgcgUCCGGCGGGCGGaUCGAGg -3'
miRNA:   3'- gcCGCGGG-----GGGCCGCCUGCCgAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 36264 0.68 0.300063
Target:  5'- cCGG-GUCCCCCGGuCGGGCucuccaucagGGCUcCGAGc -3'
miRNA:   3'- -GCCgCGGGGGGCC-GCCUG----------CCGA-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 36387 0.66 0.401322
Target:  5'- cCGGgGCCCCCggCGGCcccGGGC-GCUCGu- -3'
miRNA:   3'- -GCCgCGGGGG--GCCG---CCUGcCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 36507 0.69 0.246076
Target:  5'- uCGGUgaGCCCgggCCGGCGGcGCGGcCUCGGAc -3'
miRNA:   3'- -GCCG--CGGGg--GGCCGCC-UGCC-GAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 36632 0.68 0.293637
Target:  5'- uCGGCGCCCggCGGCGG-CGGCg---- -3'
miRNA:   3'- -GCCGCGGGggGCCGCCuGCCGagcuu -5'
29641 5' -67.3 NC_006151.1 + 36717 0.66 0.401322
Target:  5'- ---aGCCCgCCGccGCGaGGCGGCUCGAu -3'
miRNA:   3'- gccgCGGGgGGC--CGC-CUGCCGAGCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.