miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 90710 0.66 0.41746
Target:  5'- -cGCGCCCgCCCcGCaGGCGGCggCGAc -3'
miRNA:   3'- gcCGCGGG-GGGcCGcCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 31327 0.66 0.41746
Target:  5'- aCGcGCGCCCaCCCucGGCGccGugGGCcCGAc -3'
miRNA:   3'- -GC-CGCGGG-GGG--CCGC--CugCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 107380 0.66 0.41746
Target:  5'- gGGCuGCCCCCCgaguuGGCGGGgGaGgaCGAc -3'
miRNA:   3'- gCCG-CGGGGGG-----CCGCCUgC-CgaGCUu -5'
29641 5' -67.3 NC_006151.1 + 54181 0.66 0.41746
Target:  5'- gGGCGCCCCCUcGCGGAUc-CUCa-- -3'
miRNA:   3'- gCCGCGGGGGGcCGCCUGccGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 19283 0.66 0.401322
Target:  5'- gCGGgGCCCaCCGgggccagcggcGCGGGCGGC-CGGu -3'
miRNA:   3'- -GCCgCGGGgGGC-----------CGCCUGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 36387 0.66 0.401322
Target:  5'- cCGGgGCCCCCggCGGCcccGGGC-GCUCGu- -3'
miRNA:   3'- -GCCgCGGGGG--GCCG---CCUGcCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 36717 0.66 0.401322
Target:  5'- ---aGCCCgCCGccGCGaGGCGGCUCGAu -3'
miRNA:   3'- gccgCGGGgGGC--CGC-CUGCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 100102 0.66 0.401322
Target:  5'- cCGGCGCCgCCCUcGCuGGCGGCcagcgccuuccUCGGGg -3'
miRNA:   3'- -GCCGCGG-GGGGcCGcCUGCCG-----------AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 133392 0.66 0.409341
Target:  5'- gCGGCGgCCggggCCGaGCGGGCGGuCUUGGc -3'
miRNA:   3'- -GCCGCgGGg---GGC-CGCCUGCC-GAGCUu -5'
29641 5' -67.3 NC_006151.1 + 55061 0.66 0.409341
Target:  5'- uCGGCGaggaCCCGGCGGGCucGGCcgCGGc -3'
miRNA:   3'- -GCCGCggg-GGGCCGCCUG--CCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 57290 0.67 0.36276
Target:  5'- gGGCGUCCagcgcggcCuuGGCGGcGCGGC-CGAAg -3'
miRNA:   3'- gCCGCGGG--------GggCCGCC-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 139268 0.67 0.36276
Target:  5'- cCGcGCGCUCCgaCGGCGGACGcGCcgcccUCGGc -3'
miRNA:   3'- -GC-CGCGGGGg-GCCGCCUGC-CG-----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 14253 0.67 0.370263
Target:  5'- gGGgGaUCCCCCGGUcggGGugGGC-CGGGa -3'
miRNA:   3'- gCCgC-GGGGGGCCG---CCugCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 31219 0.67 0.370263
Target:  5'- aGGCcgGgCCCCCGGcCGGcCGGCccggCGAGc -3'
miRNA:   3'- gCCG--CgGGGGGCC-GCCuGCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 31740 0.67 0.370263
Target:  5'- aGGCGCCCgCgCCGG-GGACGcGCcugCGGc -3'
miRNA:   3'- gCCGCGGG-G-GGCCgCCUGC-CGa--GCUu -5'
29641 5' -67.3 NC_006151.1 + 9884 0.67 0.370263
Target:  5'- gGGCGCUuccuCCCCGGCGGucCGGgaaGAAa -3'
miRNA:   3'- gCCGCGG----GGGGCCGCCu-GCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 76793 0.67 0.370263
Target:  5'- uCGGCGCCguacagcgCCCCGGCgaGGGCGGgCgCGu- -3'
miRNA:   3'- -GCCGCGG--------GGGGCCG--CCUGCC-GaGCuu -5'
29641 5' -67.3 NC_006151.1 + 127694 0.67 0.370263
Target:  5'- gCGGCGCUCUCCuGC-GACGaGCUCGu- -3'
miRNA:   3'- -GCCGCGGGGGGcCGcCUGC-CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 75454 0.67 0.370263
Target:  5'- uGGCGCgCguagcggUCGGCGGcCGGCUUGAAg -3'
miRNA:   3'- gCCGCGgGg------GGCCGCCuGCCGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 56350 0.67 0.36276
Target:  5'- gCGcGCGCCCCgCCGGCGcGGaaGCUaCGGc -3'
miRNA:   3'- -GC-CGCGGGG-GGCCGC-CUgcCGA-GCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.