miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 36924 0.73 0.147521
Target:  5'- aGGCGCCCUCCGccGCGGccGCGGCUUc-- -3'
miRNA:   3'- gCCGCGGGGGGC--CGCC--UGCCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 37174 0.68 0.28111
Target:  5'- cCGGCGCCCgCC-GCGGccccGCGGCccUCGGc -3'
miRNA:   3'- -GCCGCGGGgGGcCGCC----UGCCG--AGCUu -5'
29641 5' -67.3 NC_006151.1 + 37370 0.66 0.41746
Target:  5'- cCGGCuccgaCCCUCCGGCcGACGGCcgCGu- -3'
miRNA:   3'- -GCCGc----GGGGGGCCGcCUGCCGa-GCuu -5'
29641 5' -67.3 NC_006151.1 + 38402 0.67 0.340889
Target:  5'- gGGCGCCCCcuCCGGCcucccCGGCUcCGGg -3'
miRNA:   3'- gCCGCGGGG--GGCCGccu--GCCGA-GCUu -5'
29641 5' -67.3 NC_006151.1 + 38587 0.69 0.26312
Target:  5'- gGGCccGCCgCCCCGG-GGACGGCgagGAGg -3'
miRNA:   3'- gCCG--CGG-GGGGCCgCCUGCCGag-CUU- -5'
29641 5' -67.3 NC_006151.1 + 38629 0.69 0.275007
Target:  5'- cCGGCgcgGCCCUCCGcGgGGACGGCcaCGGc -3'
miRNA:   3'- -GCCG---CGGGGGGC-CgCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 39688 0.66 0.401322
Target:  5'- gCGcGUGCUCCCCaccGUGGACGGCUg--- -3'
miRNA:   3'- -GC-CGCGGGGGGc--CGCCUGCCGAgcuu -5'
29641 5' -67.3 NC_006151.1 + 39984 0.66 0.393403
Target:  5'- gGGCGCCCCgCCGGCcgugcucugGGACuuuGCccccuUCGAGa -3'
miRNA:   3'- gCCGCGGGG-GGCCG---------CCUGc--CG-----AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 40086 0.67 0.348072
Target:  5'- gGGCGCCggggccggCCCCGGCgaGGACGGggaCUCu-- -3'
miRNA:   3'- gCCGCGG--------GGGGCCG--CCUGCC---GAGcuu -5'
29641 5' -67.3 NC_006151.1 + 40255 0.71 0.195802
Target:  5'- gGGCGCCCCCuCGGCc--CGGC-CGGAc -3'
miRNA:   3'- gCCGCGGGGG-GCCGccuGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 40569 0.73 0.144029
Target:  5'- gCGGCGgCggCCgCGGCGGAgGGCUCGGc -3'
miRNA:   3'- -GCCGCgG--GGgGCCGCCUgCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 43689 0.68 0.293637
Target:  5'- aGGgGCCCgCCGGCGcGACGGggaGAGg -3'
miRNA:   3'- gCCgCGGGgGGCCGC-CUGCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 44102 0.69 0.244423
Target:  5'- cCGaGCGCCCauccccaucaacccCCCGG-GGGCGGCcaUCGAAa -3'
miRNA:   3'- -GC-CGCGGG--------------GGGCCgCCUGCCG--AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 45560 0.73 0.130804
Target:  5'- aCGGCGCgCCCgGGCcaucgucccgGGACGGCcCGAGg -3'
miRNA:   3'- -GCCGCGgGGGgCCG----------CCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 46567 0.7 0.229958
Target:  5'- aGGCGCUCCCCGcGCagggcccgacGGGCGGC-CGu- -3'
miRNA:   3'- gCCGCGGGGGGC-CG----------CCUGCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 47214 0.71 0.191301
Target:  5'- uCGGgGCUCUcgggUCGGCuGGGCGGCUCGGc -3'
miRNA:   3'- -GCCgCGGGG----GGCCG-CCUGCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 48229 0.71 0.191301
Target:  5'- -cGCGCUCCCCGGCGcGAgGaGCUgGAAu -3'
miRNA:   3'- gcCGCGGGGGGCCGC-CUgC-CGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 49215 0.66 0.396558
Target:  5'- gCGGCGCggggUCCCCGGCucccacgccccgcucGGcugggcGCGGCUCGu- -3'
miRNA:   3'- -GCCGCG----GGGGGCCG---------------CC------UGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 50030 0.69 0.246076
Target:  5'- gCGGCGCCCCCgGGC--GCGGC-Ca-- -3'
miRNA:   3'- -GCCGCGGGGGgCCGccUGCCGaGcuu -5'
29641 5' -67.3 NC_006151.1 + 50428 0.67 0.360529
Target:  5'- aGGCGCCCCugcgcgCCGGCGGccugggcaccgcccGCGggcGCUCGc- -3'
miRNA:   3'- gCCGCGGGG------GGCCGCC--------------UGC---CGAGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.