Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29642 | 3' | -54.9 | NC_006151.1 | + | 45444 | 0.67 | 0.913791 |
Target: 5'- gGGCGUCGCACgcaCCgCggggcggcgacggaCCCAgggguGAGAGCg -3' miRNA: 3'- gCUGCAGCGUGa--GGaG--------------GGGU-----UUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 111882 | 0.67 | 0.909607 |
Target: 5'- uCGcCGUCGCuGCagcgcagguUCC-CCCCGGAGAGg -3' miRNA: 3'- -GCuGCAGCG-UG---------AGGaGGGGUUUCUCg -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 81349 | 0.67 | 0.909607 |
Target: 5'- cCGcCGcCGCGC-CCggggCCCCGgcGGGCg -3' miRNA: 3'- -GCuGCaGCGUGaGGa---GGGGUuuCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 108687 | 0.67 | 0.909607 |
Target: 5'- gCGGCGgcccgaGCAcCUCCUggagCCCCcGGGAGUg -3' miRNA: 3'- -GCUGCag----CGU-GAGGA----GGGGuUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 133295 | 0.68 | 0.869079 |
Target: 5'- -cACGUCGaGgUUCUCCCCGGGG-GCg -3' miRNA: 3'- gcUGCAGCgUgAGGAGGGGUUUCuCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 128191 | 0.68 | 0.869079 |
Target: 5'- gCGAgCGUgcCGCGCUCCauggcgCCCCAGGcgugcgacGAGCu -3' miRNA: 3'- -GCU-GCA--GCGUGAGGa-----GGGGUUU--------CUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 31473 | 0.68 | 0.861547 |
Target: 5'- cCGGCaUCGguCUCC-CCCCAAaacGGAGa -3' miRNA: 3'- -GCUGcAGCguGAGGaGGGGUU---UCUCg -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 39072 | 0.68 | 0.861547 |
Target: 5'- gCGugGUgGUGCUCUacgacccgcugCCCCAcgAGGAGCu -3' miRNA: 3'- -GCugCAgCGUGAGGa----------GGGGU--UUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 112191 | 0.68 | 0.853808 |
Target: 5'- -cGCGcCGCGCccgcagcgCCUCCCCGu-GGGCg -3' miRNA: 3'- gcUGCaGCGUGa-------GGAGGGGUuuCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 6636 | 0.68 | 0.853808 |
Target: 5'- aCGAUGgagacCGCGCUUauaagcgCCCCGAGGAGa -3' miRNA: 3'- -GCUGCa----GCGUGAGga-----GGGGUUUCUCg -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 18298 | 0.68 | 0.853808 |
Target: 5'- aGACGUCGaagccggaGCggggcgCCUCCUCGGGGcGCa -3' miRNA: 3'- gCUGCAGCg-------UGa-----GGAGGGGUUUCuCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 141862 | 0.68 | 0.869079 |
Target: 5'- -cGCGcCGCGC-CCUCUggugCCGGAGGGCc -3' miRNA: 3'- gcUGCaGCGUGaGGAGG----GGUUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 37406 | 0.68 | 0.876396 |
Target: 5'- aCGGCGgCGC-CggggaCUCCCgCGAGGGGCu -3' miRNA: 3'- -GCUGCaGCGuGag---GAGGG-GUUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 115127 | 0.68 | 0.876396 |
Target: 5'- gCGACG-CGCGCgugcgCCUCggccagcacgcgCCCGAAG-GCg -3' miRNA: 3'- -GCUGCaGCGUGa----GGAG------------GGGUUUCuCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 114963 | 0.68 | 0.879262 |
Target: 5'- uGACGUaggacaCGCGCUCCuugacgcucggcaccUCCCCGuGGcGCa -3' miRNA: 3'- gCUGCA------GCGUGAGG---------------AGGGGUuUCuCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 20412 | 0.68 | 0.882092 |
Target: 5'- cCGuCGUCGCccccuccucgucCUCCUCCUCuucgucGGAGCg -3' miRNA: 3'- -GCuGCAGCGu-----------GAGGAGGGGuu----UCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 33971 | 0.68 | 0.883494 |
Target: 5'- gCGGCGccCGCGCggggacacucuuUCC-CCCgGAGGGGCg -3' miRNA: 3'- -GCUGCa-GCGUG------------AGGaGGGgUUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 127774 | 0.68 | 0.883494 |
Target: 5'- uCGuCGUCGCcCUCCcccucCCCCGccgccgcgcgcGGGGGCg -3' miRNA: 3'- -GCuGCAGCGuGAGGa----GGGGU-----------UUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 8301 | 0.68 | 0.883494 |
Target: 5'- gGGCGcCGCG-UCCcgCCCCGAgcccccGGGGCg -3' miRNA: 3'- gCUGCaGCGUgAGGa-GGGGUU------UCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 100730 | 0.68 | 0.853808 |
Target: 5'- aGGCGccgccCGCGCccgCCUUcacgCCCGAGGAGCu -3' miRNA: 3'- gCUGCa----GCGUGa--GGAG----GGGUUUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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