Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29642 | 3' | -54.9 | NC_006151.1 | + | 90607 | 0.66 | 0.946168 |
Target: 5'- aGGCGUgGCcccCUUC-CCCCGAGGcGGCc -3' miRNA: 3'- gCUGCAgCGu--GAGGaGGGGUUUC-UCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 132079 | 0.66 | 0.941662 |
Target: 5'- uCGACcagGUCgGCGCcgUCCUCCUCGAuGAGg -3' miRNA: 3'- -GCUG---CAG-CGUG--AGGAGGGGUUuCUCg -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 3607 | 0.66 | 0.941662 |
Target: 5'- uCGuCGUCGCGgUggccguggCCgUCCCCGcgGAGGGCc -3' miRNA: 3'- -GCuGCAGCGUgA--------GG-AGGGGU--UUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 33275 | 0.66 | 0.941662 |
Target: 5'- gCGGCGgccaUCGCccgACcCUUCCCCGGGGcGCg -3' miRNA: 3'- -GCUGC----AGCG---UGaGGAGGGGUUUCuCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 23688 | 0.66 | 0.941662 |
Target: 5'- uCGACGgaggGCAUggCgUCCCCGGGGcAGCc -3' miRNA: 3'- -GCUGCag--CGUGa-GgAGGGGUUUC-UCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 139588 | 0.67 | 0.903428 |
Target: 5'- gGGC-UCGCGC-CC-CCCCGAGcGGCg -3' miRNA: 3'- gCUGcAGCGUGaGGaGGGGUUUcUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 128542 | 0.67 | 0.897014 |
Target: 5'- aCGGCGggcccgccgGCGCggugCCg-CCCAAAGAGCg -3' miRNA: 3'- -GCUGCag-------CGUGa---GGagGGGUUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 115242 | 0.67 | 0.897014 |
Target: 5'- aGACG--GC-CUCgUCgCCAAAGAGCa -3' miRNA: 3'- gCUGCagCGuGAGgAGgGGUUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 18738 | 0.67 | 0.897014 |
Target: 5'- gCGuCGUCGcCGCcgCCggggCCCCAcGGGGUg -3' miRNA: 3'- -GCuGCAGC-GUGa-GGa---GGGGUuUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 60409 | 0.67 | 0.897014 |
Target: 5'- gGGCG-CGCACggCCcagcggcccacgUCCUCGGGGGGCc -3' miRNA: 3'- gCUGCaGCGUGa-GG------------AGGGGUUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 117867 | 0.67 | 0.890368 |
Target: 5'- cCGACGUCGCGUUCg-CCCCucGGcGCc -3' miRNA: 3'- -GCUGCAGCGUGAGgaGGGGuuUCuCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 26951 | 0.67 | 0.908999 |
Target: 5'- aGACGUCGCGCUCguugagCUCgCgCAGcgcgcugcgcagcGGGGCg -3' miRNA: 3'- gCUGCAGCGUGAG------GAGgG-GUU-------------UCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 108687 | 0.67 | 0.909607 |
Target: 5'- gCGGCGgcccgaGCAcCUCCUggagCCCCcGGGAGUg -3' miRNA: 3'- -GCUGCag----CGU-GAGGA----GGGGuUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 81349 | 0.67 | 0.909607 |
Target: 5'- cCGcCGcCGCGC-CCggggCCCCGgcGGGCg -3' miRNA: 3'- -GCuGCaGCGUGaGGa---GGGGUuuCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 111882 | 0.67 | 0.909607 |
Target: 5'- uCGcCGUCGCuGCagcgcagguUCC-CCCCGGAGAGg -3' miRNA: 3'- -GCuGCAGCG-UG---------AGGaGGGGUUUCUCg -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 45444 | 0.67 | 0.913791 |
Target: 5'- gGGCGUCGCACgcaCCgCggggcggcgacggaCCCAgggguGAGAGCg -3' miRNA: 3'- gCUGCAGCGUGa--GGaG--------------GGGU-----UUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 122900 | 0.67 | 0.915548 |
Target: 5'- gCGACGcccUCGaGCgCCUCCUCGAGG-GCg -3' miRNA: 3'- -GCUGC---AGCgUGaGGAGGGGUUUCuCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 130304 | 0.67 | 0.915548 |
Target: 5'- cCGACGgcgcggagCGCGCgcgCCgcgCgCUCGGGGAGCu -3' miRNA: 3'- -GCUGCa-------GCGUGa--GGa--G-GGGUUUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 37331 | 0.67 | 0.915548 |
Target: 5'- cCGACGggcCGCuGCUCa-CCCCGcucgGGGAGCc -3' miRNA: 3'- -GCUGCa--GCG-UGAGgaGGGGU----UUCUCG- -5' |
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29642 | 3' | -54.9 | NC_006151.1 | + | 36037 | 0.67 | 0.890368 |
Target: 5'- cCGGCGcCGCgGCUCCUCCggCGAGGAu- -3' miRNA: 3'- -GCUGCaGCG-UGAGGAGGg-GUUUCUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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