miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 3' -54.9 NC_006151.1 + 124761 0.71 0.707874
Target:  5'- gGAC-UCGCGcCUCCgcgCCUCcGAGAGCg -3'
miRNA:   3'- gCUGcAGCGU-GAGGa--GGGGuUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 31588 0.71 0.727788
Target:  5'- gGGCGgCGCGCUCCgcgcUCCCCcgccgccuGGGCg -3'
miRNA:   3'- gCUGCaGCGUGAGG----AGGGGuuu-----CUCG- -5'
29642 3' -54.9 NC_006151.1 + 38089 0.71 0.727788
Target:  5'- uGACGgccgcgcugcUCGCGCUCCgcgacgcgaUCCCCGGGGccGGCc -3'
miRNA:   3'- gCUGC----------AGCGUGAGG---------AGGGGUUUC--UCG- -5'
29642 3' -54.9 NC_006151.1 + 4825 0.71 0.727788
Target:  5'- gGACGUCGUcCUCgUCCC---AGAGCc -3'
miRNA:   3'- gCUGCAGCGuGAGgAGGGguuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 122787 0.71 0.737626
Target:  5'- gGGCGgcuGCGCggCCUCgCCCGAcGAGCg -3'
miRNA:   3'- gCUGCag-CGUGa-GGAG-GGGUUuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 72712 0.71 0.737626
Target:  5'- -uGCGcaaaGUGCUCCUcggCCCCGAGGGGCg -3'
miRNA:   3'- gcUGCag--CGUGAGGA---GGGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 130555 0.71 0.747371
Target:  5'- gGGCGgCGCGCUgCCgCCCCAcGAGuGCa -3'
miRNA:   3'- gCUGCaGCGUGA-GGaGGGGU-UUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 27229 0.71 0.747371
Target:  5'- cCGugGaCGCGCaCCUCCUCGGGGucgGGCg -3'
miRNA:   3'- -GCugCaGCGUGaGGAGGGGUUUC---UCG- -5'
29642 3' -54.9 NC_006151.1 + 99531 0.7 0.757014
Target:  5'- uGGCGcCGCGC-CCg-CCCAcGGAGCa -3'
miRNA:   3'- gCUGCaGCGUGaGGagGGGUuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 65505 0.7 0.757014
Target:  5'- cCGGCGgagCGCGcCUCCUCCgCGGccAGcAGCg -3'
miRNA:   3'- -GCUGCa--GCGU-GAGGAGGgGUU--UC-UCG- -5'
29642 3' -54.9 NC_006151.1 + 18910 0.7 0.757014
Target:  5'- uGGCGUucgugUGCAcCUCCUCgCCGAAG-GCg -3'
miRNA:   3'- gCUGCA-----GCGU-GAGGAGgGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 99474 0.7 0.766546
Target:  5'- uGACGgcgGCGCUggggCUCCCCGAgaAGGGCg -3'
miRNA:   3'- gCUGCag-CGUGAg---GAGGGGUU--UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 93038 0.7 0.766546
Target:  5'- cCGuCGUCGC-CUCCcCCCCGc-GGGCc -3'
miRNA:   3'- -GCuGCAGCGuGAGGaGGGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 64819 0.7 0.775958
Target:  5'- cCGGCGgccaGCUCCUCCUCGAGGAuGUc -3'
miRNA:   3'- -GCUGCagcgUGAGGAGGGGUUUCU-CG- -5'
29642 3' -54.9 NC_006151.1 + 136647 0.7 0.775958
Target:  5'- cCGugGg-GCGCUCgCcCCUCGGGGAGCg -3'
miRNA:   3'- -GCugCagCGUGAG-GaGGGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 74543 0.7 0.785241
Target:  5'- gCGugGUUGaGCUCCUCCU---GGGGCu -3'
miRNA:   3'- -GCugCAGCgUGAGGAGGGguuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 134527 0.7 0.785241
Target:  5'- gCGGCaUCGUcgUCUUCCCCAcgcccuggGAGAGCg -3'
miRNA:   3'- -GCUGcAGCGugAGGAGGGGU--------UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 67078 0.7 0.785241
Target:  5'- uCGACa-CGcCGCUCUUCUCCGAGGAcGCg -3'
miRNA:   3'- -GCUGcaGC-GUGAGGAGGGGUUUCU-CG- -5'
29642 3' -54.9 NC_006151.1 + 49690 0.7 0.798903
Target:  5'- gGACGcgcccccggagagCGCACccCCUCCCCGggagggggugcucGGGAGCg -3'
miRNA:   3'- gCUGCa------------GCGUGa-GGAGGGGU-------------UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 39856 0.69 0.803383
Target:  5'- gGGCcUCGCcgaGCUCCgcggCCCCGAGG-GCc -3'
miRNA:   3'- gCUGcAGCG---UGAGGa---GGGGUUUCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.