miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 3' -54.9 NC_006151.1 + 98674 0.66 0.931936
Target:  5'- aCGACGUccuggcCGCGCcCCgcgucgugCCCCc-GGAGCa -3'
miRNA:   3'- -GCUGCA------GCGUGaGGa-------GGGGuuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 42576 0.66 0.931936
Target:  5'- cCGGCGccaCGCGCcgCCcgUCCCCGAGaGGCc -3'
miRNA:   3'- -GCUGCa--GCGUGa-GG--AGGGGUUUcUCG- -5'
29642 3' -54.9 NC_006151.1 + 53553 0.66 0.931425
Target:  5'- aGGCG-CGCaaACUCCucguggcUCCCCGc-GAGCa -3'
miRNA:   3'- gCUGCaGCG--UGAGG-------AGGGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 91633 0.66 0.926714
Target:  5'- gGGC-UCGCcgUCCUCCagcaCGAAGGGCc -3'
miRNA:   3'- gCUGcAGCGugAGGAGGg---GUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 121424 0.66 0.925641
Target:  5'- gGACGUCGCggggcucGCgccggCCUCgcuggugCCCGcGGAGCu -3'
miRNA:   3'- gCUGCAGCG-------UGa----GGAG-------GGGUuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 122900 0.67 0.915548
Target:  5'- gCGACGcccUCGaGCgCCUCCUCGAGG-GCg -3'
miRNA:   3'- -GCUGC---AGCgUGaGGAGGGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 130304 0.67 0.915548
Target:  5'- cCGACGgcgcggagCGCGCgcgCCgcgCgCUCGGGGAGCu -3'
miRNA:   3'- -GCUGCa-------GCGUGa--GGa--G-GGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 37331 0.67 0.915548
Target:  5'- cCGACGggcCGCuGCUCa-CCCCGcucgGGGAGCc -3'
miRNA:   3'- -GCUGCa--GCG-UGAGgaGGGGU----UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 129196 0.67 0.915548
Target:  5'- cCGcCGUCaGCA--CCUCCCCGGGG-GCc -3'
miRNA:   3'- -GCuGCAG-CGUgaGGAGGGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 45444 0.67 0.913791
Target:  5'- gGGCGUCGCACgcaCCgCggggcggcgacggaCCCAgggguGAGAGCg -3'
miRNA:   3'- gCUGCAGCGUGa--GGaG--------------GGGU-----UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 108687 0.67 0.909607
Target:  5'- gCGGCGgcccgaGCAcCUCCUggagCCCCcGGGAGUg -3'
miRNA:   3'- -GCUGCag----CGU-GAGGA----GGGGuUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 81349 0.67 0.909607
Target:  5'- cCGcCGcCGCGC-CCggggCCCCGgcGGGCg -3'
miRNA:   3'- -GCuGCaGCGUGaGGa---GGGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 111882 0.67 0.909607
Target:  5'- uCGcCGUCGCuGCagcgcagguUCC-CCCCGGAGAGg -3'
miRNA:   3'- -GCuGCAGCG-UG---------AGGaGGGGUUUCUCg -5'
29642 3' -54.9 NC_006151.1 + 26951 0.67 0.908999
Target:  5'- aGACGUCGCGCUCguugagCUCgCgCAGcgcgcugcgcagcGGGGCg -3'
miRNA:   3'- gCUGCAGCGUGAG------GAGgG-GUU-------------UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 139588 0.67 0.903428
Target:  5'- gGGC-UCGCGC-CC-CCCCGAGcGGCg -3'
miRNA:   3'- gCUGcAGCGUGaGGaGGGGUUUcUCG- -5'
29642 3' -54.9 NC_006151.1 + 128542 0.67 0.897014
Target:  5'- aCGGCGggcccgccgGCGCggugCCg-CCCAAAGAGCg -3'
miRNA:   3'- -GCUGCag-------CGUGa---GGagGGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 115242 0.67 0.897014
Target:  5'- aGACG--GC-CUCgUCgCCAAAGAGCa -3'
miRNA:   3'- gCUGCagCGuGAGgAGgGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 18738 0.67 0.897014
Target:  5'- gCGuCGUCGcCGCcgCCggggCCCCAcGGGGUg -3'
miRNA:   3'- -GCuGCAGC-GUGa-GGa---GGGGUuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 60409 0.67 0.897014
Target:  5'- gGGCG-CGCACggCCcagcggcccacgUCCUCGGGGGGCc -3'
miRNA:   3'- gCUGCaGCGUGa-GG------------AGGGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 36037 0.67 0.890368
Target:  5'- cCGGCGcCGCgGCUCCUCCggCGAGGAu- -3'
miRNA:   3'- -GCUGCaGCG-UGAGGAGGg-GUUUCUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.