miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 3' -54.9 NC_006151.1 + 39856 0.69 0.803383
Target:  5'- gGGCcUCGCcgaGCUCCgcggCCCCGAGG-GCc -3'
miRNA:   3'- gCUGcAGCG---UGAGGa---GGGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 123357 0.69 0.812225
Target:  5'- gGACGcCGCGCUCCUUCCgGccGucacGCg -3'
miRNA:   3'- gCUGCaGCGUGAGGAGGGgUuuCu---CG- -5'
29642 3' -54.9 NC_006151.1 + 76793 0.69 0.812225
Target:  5'- uCGGCGcCGUACagCgCCCCGgcGAGGGCg -3'
miRNA:   3'- -GCUGCaGCGUGagGaGGGGU--UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 21790 0.69 0.812225
Target:  5'- gGGCGaacggGCACUCUUgCCCCucgGGGAGCg -3'
miRNA:   3'- gCUGCag---CGUGAGGA-GGGGu--UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 15321 0.69 0.820902
Target:  5'- gCGACGUcuacgaccCGCGCguccUCUCCCCGccggucaucGAGGGCc -3'
miRNA:   3'- -GCUGCA--------GCGUGa---GGAGGGGU---------UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 130215 0.69 0.820902
Target:  5'- gGACG-CGCAgCUCCggCCaguaggCCAGGGAGCc -3'
miRNA:   3'- gCUGCaGCGU-GAGGa-GG------GGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 67876 0.69 0.829406
Target:  5'- uGGCG-CGCGCgCCagCCCGcGGGGCa -3'
miRNA:   3'- gCUGCaGCGUGaGGagGGGUuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 66010 0.69 0.829406
Target:  5'- gCGGCGUCGaGCgCCUCCgCAAAGuccGCc -3'
miRNA:   3'- -GCUGCAGCgUGaGGAGGgGUUUCu--CG- -5'
29642 3' -54.9 NC_006151.1 + 114338 0.69 0.83773
Target:  5'- gCGACGUgCGCguGCUCUUCUUCGAGGAc- -3'
miRNA:   3'- -GCUGCA-GCG--UGAGGAGGGGUUUCUcg -5'
29642 3' -54.9 NC_006151.1 + 392 0.69 0.83773
Target:  5'- uGACGcCGgGCUCCUCCCCc------ -3'
miRNA:   3'- gCUGCaGCgUGAGGAGGGGuuucucg -5'
29642 3' -54.9 NC_006151.1 + 102106 0.69 0.844255
Target:  5'- aCGugGUCGCGugcgcgggccggagcCUgUUCCCCGGgcgcgccgggcugcuGGAGCg -3'
miRNA:   3'- -GCugCAGCGU---------------GAgGAGGGGUU---------------UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 109271 0.69 0.845062
Target:  5'- cCGACGUCGCuggCCgCCCCcuccgagAucGAGCg -3'
miRNA:   3'- -GCUGCAGCGugaGGaGGGG-------UuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 69505 0.69 0.845867
Target:  5'- -cGCGcCGC-CUCCUCCgCCGccgcgccgcgcGAGGGCg -3'
miRNA:   3'- gcUGCaGCGuGAGGAGG-GGU-----------UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 129423 0.69 0.845867
Target:  5'- gCGAgGUCG-ACgUCCggCCCCAAGuGGGCg -3'
miRNA:   3'- -GCUgCAGCgUG-AGGa-GGGGUUU-CUCG- -5'
29642 3' -54.9 NC_006151.1 + 36642 0.69 0.845867
Target:  5'- gCGGCGgcgGCGCccCCUCCgCCGGAGGGg -3'
miRNA:   3'- -GCUGCag-CGUGa-GGAGG-GGUUUCUCg -5'
29642 3' -54.9 NC_006151.1 + 71229 0.69 0.845867
Target:  5'- gGGCG-CGCGCgCCgaCCCCGucGAGUa -3'
miRNA:   3'- gCUGCaGCGUGaGGa-GGGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 112191 0.68 0.853808
Target:  5'- -cGCGcCGCGCccgcagcgCCUCCCCGu-GGGCg -3'
miRNA:   3'- gcUGCaGCGUGa-------GGAGGGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 6636 0.68 0.853808
Target:  5'- aCGAUGgagacCGCGCUUauaagcgCCCCGAGGAGa -3'
miRNA:   3'- -GCUGCa----GCGUGAGga-----GGGGUUUCUCg -5'
29642 3' -54.9 NC_006151.1 + 18298 0.68 0.853808
Target:  5'- aGACGUCGaagccggaGCggggcgCCUCCUCGGGGcGCa -3'
miRNA:   3'- gCUGCAGCg-------UGa-----GGAGGGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 100730 0.68 0.853808
Target:  5'- aGGCGccgccCGCGCccgCCUUcacgCCCGAGGAGCu -3'
miRNA:   3'- gCUGCa----GCGUGa--GGAG----GGGUUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.