miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 3' -54.9 NC_006151.1 + 392 0.69 0.83773
Target:  5'- uGACGcCGgGCUCCUCCCCc------ -3'
miRNA:   3'- gCUGCaGCgUGAGGAGGGGuuucucg -5'
29642 3' -54.9 NC_006151.1 + 2339 0.66 0.946168
Target:  5'- uCGGCGUCGgGCUCCagcagCgCCGcGGcGCa -3'
miRNA:   3'- -GCUGCAGCgUGAGGa----GgGGUuUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 3607 0.66 0.941662
Target:  5'- uCGuCGUCGCGgUggccguggCCgUCCCCGcgGAGGGCc -3'
miRNA:   3'- -GCuGCAGCGUgA--------GG-AGGGGU--UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 4825 0.71 0.727788
Target:  5'- gGACGUCGUcCUCgUCCC---AGAGCc -3'
miRNA:   3'- gCUGCAGCGuGAGgAGGGguuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 6636 0.68 0.853808
Target:  5'- aCGAUGgagacCGCGCUUauaagcgCCCCGAGGAGa -3'
miRNA:   3'- -GCUGCa----GCGUGAGga-----GGGGUUUCUCg -5'
29642 3' -54.9 NC_006151.1 + 7662 0.73 0.585425
Target:  5'- uCGGCG-CGCGCUCCgagggcgCCCCAgccggucgGAGAGa -3'
miRNA:   3'- -GCUGCaGCGUGAGGa------GGGGU--------UUCUCg -5'
29642 3' -54.9 NC_006151.1 + 8301 0.68 0.883494
Target:  5'- gGGCGcCGCG-UCCcgCCCCGAgcccccGGGGCg -3'
miRNA:   3'- gCUGCaGCGUgAGGa-GGGGUU------UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 14285 0.72 0.687702
Target:  5'- gGGCGUgGCaACUCCUCCCCGu----- -3'
miRNA:   3'- gCUGCAgCG-UGAGGAGGGGUuucucg -5'
29642 3' -54.9 NC_006151.1 + 15321 0.69 0.820902
Target:  5'- gCGACGUcuacgaccCGCGCguccUCUCCCCGccggucaucGAGGGCc -3'
miRNA:   3'- -GCUGCA--------GCGUGa---GGAGGGGU---------UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 18298 0.68 0.853808
Target:  5'- aGACGUCGaagccggaGCggggcgCCUCCUCGGGGcGCa -3'
miRNA:   3'- gCUGCAGCg-------UGa-----GGAGGGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 18738 0.67 0.897014
Target:  5'- gCGuCGUCGcCGCcgCCggggCCCCAcGGGGUg -3'
miRNA:   3'- -GCuGCAGC-GUGa-GGa---GGGGUuUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 18910 0.7 0.757014
Target:  5'- uGGCGUucgugUGCAcCUCCUCgCCGAAG-GCg -3'
miRNA:   3'- gCUGCA-----GCGU-GAGGAGgGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 19490 0.66 0.946168
Target:  5'- cCGAUGcCcCGCUCCggggCCUCGGGGAcGCa -3'
miRNA:   3'- -GCUGCaGcGUGAGGa---GGGGUUUCU-CG- -5'
29642 3' -54.9 NC_006151.1 + 20412 0.68 0.882092
Target:  5'- cCGuCGUCGCccccuccucgucCUCCUCCUCuucgucGGAGCg -3'
miRNA:   3'- -GCuGCAGCGu-----------GAGGAGGGGuu----UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 21013 0.66 0.936919
Target:  5'- gCGACGU-GCACgcugacgCCggcgCCCCuGAAGAGg -3'
miRNA:   3'- -GCUGCAgCGUGa------GGa---GGGG-UUUCUCg -5'
29642 3' -54.9 NC_006151.1 + 21790 0.69 0.812225
Target:  5'- gGGCGaacggGCACUCUUgCCCCucgGGGAGCg -3'
miRNA:   3'- gCUGCag---CGUGAGGA-GGGGu--UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 23688 0.66 0.941662
Target:  5'- uCGACGgaggGCAUggCgUCCCCGGGGcAGCc -3'
miRNA:   3'- -GCUGCag--CGUGa-GgAGGGGUUUC-UCG- -5'
29642 3' -54.9 NC_006151.1 + 26885 1.12 0.002247
Target:  5'- uCGACGUCGCACUCCUCCCCAAAGAGCg -3'
miRNA:   3'- -GCUGCAGCGUGAGGAGGGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 26951 0.67 0.908999
Target:  5'- aGACGUCGCGCUCguugagCUCgCgCAGcgcgcugcgcagcGGGGCg -3'
miRNA:   3'- gCUGCAGCGUGAG------GAGgG-GUU-------------UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 27229 0.71 0.747371
Target:  5'- cCGugGaCGCGCaCCUCCUCGGGGucgGGCg -3'
miRNA:   3'- -GCugCaGCGUGaGGAGGGGUUUC---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.