miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 3' -54.9 NC_006151.1 + 142572 0.73 0.635587
Target:  5'- aGGCG-CGCuCUCCUCUCCGGucccggcGGGGCu -3'
miRNA:   3'- gCUGCaGCGuGAGGAGGGGUU-------UCUCG- -5'
29642 3' -54.9 NC_006151.1 + 141862 0.68 0.869079
Target:  5'- -cGCGcCGCGC-CCUCUggugCCGGAGGGCc -3'
miRNA:   3'- gcUGCaGCGUGaGGAGG----GGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 141771 0.67 0.890368
Target:  5'- uGGCGUCGCcggUUCUgUCCCGGGGAcGCg -3'
miRNA:   3'- gCUGCAGCGu--GAGGaGGGGUUUCU-CG- -5'
29642 3' -54.9 NC_006151.1 + 141566 0.73 0.605849
Target:  5'- cCGGCGcgauccucCGcCGCUCCUCCCCccgggcGAGAGCc -3'
miRNA:   3'- -GCUGCa-------GC-GUGAGGAGGGGu-----UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 140146 0.66 0.946168
Target:  5'- aCGugGgucaaGCucaUCCUCaCCAAGGGGCu -3'
miRNA:   3'- -GCugCag---CGug-AGGAGgGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 139588 0.67 0.903428
Target:  5'- gGGC-UCGCGC-CC-CCCCGAGcGGCg -3'
miRNA:   3'- gCUGcAGCGUGaGGaGGGGUUUcUCG- -5'
29642 3' -54.9 NC_006151.1 + 137327 0.76 0.458107
Target:  5'- uCGACGcgcUCGCgcuGCUCUUCCCCGAGGccgacGGCg -3'
miRNA:   3'- -GCUGC---AGCG---UGAGGAGGGGUUUC-----UCG- -5'
29642 3' -54.9 NC_006151.1 + 136747 0.73 0.626351
Target:  5'- cCGAgCGUCGCGCgCCUcgCCCCGGccauGGGCg -3'
miRNA:   3'- -GCU-GCAGCGUGaGGA--GGGGUUu---CUCG- -5'
29642 3' -54.9 NC_006151.1 + 136647 0.7 0.775958
Target:  5'- cCGugGg-GCGCUCgCcCCUCGGGGAGCg -3'
miRNA:   3'- -GCugCagCGUGAG-GaGGGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 136209 0.77 0.38746
Target:  5'- aCGugG-CGCGCUUCggCCCCGAGGAGa -3'
miRNA:   3'- -GCugCaGCGUGAGGa-GGGGUUUCUCg -5'
29642 3' -54.9 NC_006151.1 + 135917 0.72 0.657117
Target:  5'- cCGGCGgucgugcgCGCGCUCUgCCgCGGGGAGCc -3'
miRNA:   3'- -GCUGCa-------GCGUGAGGaGGgGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 134527 0.7 0.785241
Target:  5'- gCGGCaUCGUcgUCUUCCCCAcgcccuggGAGAGCg -3'
miRNA:   3'- -GCUGcAGCGugAGGAGGGGU--------UUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 133295 0.68 0.869079
Target:  5'- -cACGUCGaGgUUCUCCCCGGGG-GCg -3'
miRNA:   3'- gcUGCAGCgUgAGGAGGGGUUUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 132079 0.66 0.941662
Target:  5'- uCGACcagGUCgGCGCcgUCCUCCUCGAuGAGg -3'
miRNA:   3'- -GCUG---CAG-CGUG--AGGAGGGGUUuCUCg -5'
29642 3' -54.9 NC_006151.1 + 130555 0.71 0.747371
Target:  5'- gGGCGgCGCGCUgCCgCCCCAcGAGuGCa -3'
miRNA:   3'- gCUGCaGCGUGA-GGaGGGGU-UUCuCG- -5'
29642 3' -54.9 NC_006151.1 + 130382 0.66 0.936919
Target:  5'- gCGGCGUCcaGCGCgaaggccagcgCCUCgCCCGc-GAGCg -3'
miRNA:   3'- -GCUGCAG--CGUGa----------GGAG-GGGUuuCUCG- -5'
29642 3' -54.9 NC_006151.1 + 130304 0.67 0.915548
Target:  5'- cCGACGgcgcggagCGCGCgcgCCgcgCgCUCGGGGAGCu -3'
miRNA:   3'- -GCUGCa-------GCGUGa--GGa--G-GGGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 130215 0.69 0.820902
Target:  5'- gGACG-CGCAgCUCCggCCaguaggCCAGGGAGCc -3'
miRNA:   3'- gCUGCaGCGU-GAGGa-GG------GGUUUCUCG- -5'
29642 3' -54.9 NC_006151.1 + 129576 0.8 0.282281
Target:  5'- aCGGCGUCGCGCUgCUCCCaGAAcuccgcGAGCg -3'
miRNA:   3'- -GCUGCAGCGUGAgGAGGGgUUU------CUCG- -5'
29642 3' -54.9 NC_006151.1 + 129423 0.69 0.845867
Target:  5'- gCGAgGUCG-ACgUCCggCCCCAAGuGGGCg -3'
miRNA:   3'- -GCUgCAGCgUG-AGGa-GGGGUUU-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.