miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 5' -63.8 NC_006151.1 + 26921 1.04 0.001485
Target:  5'- aUGACCGGCGGGGAGAGGACGCGCGGu -3'
miRNA:   3'- -ACUGGCCGCCCCUCUCCUGCGCGCCc -5'
29642 5' -63.8 NC_006151.1 + 32849 0.89 0.018564
Target:  5'- gGGCCGGCGGGGAuGGGGAagaaggcccgaccCGCGCGGGg -3'
miRNA:   3'- aCUGGCCGCCCCU-CUCCU-------------GCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 10439 0.85 0.034582
Target:  5'- aGGCCGGCGGGGAgggaggaggagGAGGACGCgGCGGcGg -3'
miRNA:   3'- aCUGGCCGCCCCU-----------CUCCUGCG-CGCC-C- -5'
29642 5' -63.8 NC_006151.1 + 29441 0.82 0.057651
Target:  5'- gGGgCGGCGGGGAGAggGGACGCGgaGGGa -3'
miRNA:   3'- aCUgGCCGCCCCUCU--CCUGCGCg-CCC- -5'
29642 5' -63.8 NC_006151.1 + 11771 0.82 0.059133
Target:  5'- cGugCGcgaaGgGGGGAGAGGGCGCGUGGGc -3'
miRNA:   3'- aCugGC----CgCCCCUCUCCUGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 84394 0.8 0.078057
Target:  5'- gGACgGGCGGGGAGcGGGugGgCGCGGu -3'
miRNA:   3'- aCUGgCCGCCCCUC-UCCugC-GCGCCc -5'
29642 5' -63.8 NC_006151.1 + 8237 0.79 0.088246
Target:  5'- --cCCGGCGGGGAGGGccgggccGGCGCGcCGGGa -3'
miRNA:   3'- acuGGCCGCCCCUCUC-------CUGCGC-GCCC- -5'
29642 5' -63.8 NC_006151.1 + 130943 0.79 0.092989
Target:  5'- gGGgCGGCGGGGGGucgcgcGGGCGCGgGGGc -3'
miRNA:   3'- aCUgGCCGCCCCUCu-----CCUGCGCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 9491 0.79 0.092989
Target:  5'- cGGCCgcGGCGuGGGAGAgcgGGGCGUGUGGGg -3'
miRNA:   3'- aCUGG--CCGC-CCCUCU---CCUGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 23001 0.79 0.095332
Target:  5'- cGGCCGcGCGGGu-GGGGGCGCGgGGGu -3'
miRNA:   3'- aCUGGC-CGCCCcuCUCCUGCGCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 121405 0.78 0.107906
Target:  5'- gGGCCugcGGCGcGGGcGGGGACGuCGCGGGg -3'
miRNA:   3'- aCUGG---CCGC-CCCuCUCCUGC-GCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 80102 0.78 0.116181
Target:  5'- aGGgCGGUGGGaGAGAGGGCG-GUGGGa -3'
miRNA:   3'- aCUgGCCGCCC-CUCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 26303 0.78 0.116181
Target:  5'- gGGggGGUGGGGGGAGGAaagaacaGCGCGGGg -3'
miRNA:   3'- aCUggCCGCCCCUCUCCUg------CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 80162 0.78 0.116181
Target:  5'- aGGgCGGUGGGaGAGAGGGCG-GUGGGa -3'
miRNA:   3'- aCUgGCCGCCC-CUCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 80132 0.78 0.116181
Target:  5'- aGGgCGGUGGGaGAGAGGGCG-GUGGGa -3'
miRNA:   3'- aCUgGCCGCCC-CUCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 80072 0.78 0.116181
Target:  5'- aGGgCGGUGGGaGAGAGGGCG-GUGGGa -3'
miRNA:   3'- aCUgGCCGCCC-CUCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 80192 0.78 0.116181
Target:  5'- aGGgCGGUGGGaGAGAGGGCG-GUGGGa -3'
miRNA:   3'- aCUgGCCGCCC-CUCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 80222 0.78 0.116181
Target:  5'- aGGgCGGUGGGaGAGAGGGCG-GUGGGa -3'
miRNA:   3'- aCUgGCCGCCC-CUCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 21394 0.77 0.128138
Target:  5'- cGGCCGGCGGGGcGAagGGGCGgUGCGGc -3'
miRNA:   3'- aCUGGCCGCCCCuCU--CCUGC-GCGCCc -5'
29642 5' -63.8 NC_006151.1 + 8495 0.76 0.146086
Target:  5'- gGGCgGGCGGGGAGGGuGucgucugugugucugUGCGCGGGg -3'
miRNA:   3'- aCUGgCCGCCCCUCUCcU---------------GCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.