miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 5' -63.8 NC_006151.1 + 1611 0.66 0.580633
Target:  5'- cGAUgGGagaaggaggagaaGGGGAccgGGGGAC-CGCGGGa -3'
miRNA:   3'- aCUGgCCg------------CCCCU---CUCCUGcGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 1800 0.68 0.464759
Target:  5'- -cACCGGgcCGGGGAGGcaGGCGC-CGGGg -3'
miRNA:   3'- acUGGCC--GCCCCUCUc-CUGCGcGCCC- -5'
29642 5' -63.8 NC_006151.1 + 2000 0.68 0.438908
Target:  5'- aGuCCGGcCGGGccGAGGGGGCGCcccgcucaGCGGa -3'
miRNA:   3'- aCuGGCC-GCCC--CUCUCCUGCG--------CGCCc -5'
29642 5' -63.8 NC_006151.1 + 2280 0.71 0.300323
Target:  5'- cGGCCGGCGGGGcgcccgcggcggcGAcGGCGCcCGGGg -3'
miRNA:   3'- aCUGGCCGCCCCu------------CUcCUGCGcGCCC- -5'
29642 5' -63.8 NC_006151.1 + 2424 0.66 0.60263
Target:  5'- --cCCGGCGGccgcaGGAGAcgaagacGGGcCGCaGCGGGg -3'
miRNA:   3'- acuGGCCGCC-----CCUCU-------CCU-GCG-CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 2576 0.68 0.470905
Target:  5'- ---aCGGUGGGGAGcacgcgcuggcgguAGG-CGCGCGGcGg -3'
miRNA:   3'- acugGCCGCCCCUC--------------UCCuGCGCGCC-C- -5'
29642 5' -63.8 NC_006151.1 + 3245 0.76 0.148216
Target:  5'- cGGCgCGGCGGcGGAGcGGGGCGCcGCGGc -3'
miRNA:   3'- aCUG-GCCGCC-CCUC-UCCUGCG-CGCCc -5'
29642 5' -63.8 NC_006151.1 + 3496 0.66 0.60263
Target:  5'- -aGCCGGUcguccucggaggaGGaGGAggagGAGGACagcaGCGCGGGa -3'
miRNA:   3'- acUGGCCG-------------CC-CCU----CUCCUG----CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 3681 0.71 0.337219
Target:  5'- gGGgCGGCGGGccccGGGCGCGCGGc -3'
miRNA:   3'- aCUgGCCGCCCcucuCCUGCGCGCCc -5'
29642 5' -63.8 NC_006151.1 + 3739 0.68 0.491381
Target:  5'- gGGCCGGCGgcGGGGGAGcuGGCGUaGCcGGa -3'
miRNA:   3'- aCUGGCCGC--CCCUCUC--CUGCG-CGcCC- -5'
29642 5' -63.8 NC_006151.1 + 3830 0.71 0.316325
Target:  5'- -uGCUGGCGGGGcuGGAGGGCccggaGC-CGGGg -3'
miRNA:   3'- acUGGCCGCCCC--UCUCCUG-----CGcGCCC- -5'
29642 5' -63.8 NC_006151.1 + 3924 0.7 0.374231
Target:  5'- gGGCCaGaGCGGGGGcAGGccGgGCGCGGGc -3'
miRNA:   3'- aCUGG-C-CGCCCCUcUCC--UgCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 3997 0.67 0.53722
Target:  5'- cGGCCacguuGGcCGGGGcgaAGAGGGC-CGCGGc -3'
miRNA:   3'- aCUGG-----CC-GCCCC---UCUCCUGcGCGCCc -5'
29642 5' -63.8 NC_006151.1 + 4200 0.7 0.365856
Target:  5'- aGGCaGGCGGGcccGAGGGCggccgggGCGCGGGc -3'
miRNA:   3'- aCUGgCCGCCCcu-CUCCUG-------CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 5046 0.71 0.335085
Target:  5'- aGGCCgcggcggaggaggaGGCGGaGGAggccGAGGGC-CGCGGGg -3'
miRNA:   3'- aCUGG--------------CCGCC-CCU----CUCCUGcGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 5119 0.7 0.374231
Target:  5'- cGGCCcggcGCGGGcGAGuGGGGCGC-CGGGc -3'
miRNA:   3'- aCUGGc---CGCCC-CUC-UCCUGCGcGCCC- -5'
29642 5' -63.8 NC_006151.1 + 5247 0.75 0.171119
Target:  5'- cGGCggCGGCGGGGgcccggggggcGGAGGGCGaGCGGGc -3'
miRNA:   3'- aCUG--GCCGCCCC-----------UCUCCUGCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 5336 0.67 0.504044
Target:  5'- cGGCC-GCGGcGGAGGGcgcccucuccggcgcGGCGCcgGCGGGg -3'
miRNA:   3'- aCUGGcCGCC-CCUCUC---------------CUGCG--CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 5649 0.7 0.381956
Target:  5'- aGACCGGCccggcggcgGGGGAGgcugGGGAa--GCGGGc -3'
miRNA:   3'- aCUGGCCG---------CCCCUC----UCCUgcgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 5841 0.66 0.555978
Target:  5'- aGGCCGGggaGGcugcGGAGGGGGacgaGCGCccGGGg -3'
miRNA:   3'- aCUGGCCg--CC----CCUCUCCUg---CGCG--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.