miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 5' -63.8 NC_006151.1 + 7726 0.68 0.453458
Target:  5'- gGACCGGCGaccggacccgaaccGGGA-AGcGACGCcgggGCGGGa -3'
miRNA:   3'- aCUGGCCGC--------------CCCUcUC-CUGCG----CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 8003 0.71 0.309581
Target:  5'- gGGCgGGCGG-GAGGGGGCGCGagacCGGc -3'
miRNA:   3'- aCUGgCCGCCcCUCUCCUGCGC----GCCc -5'
29642 5' -63.8 NC_006151.1 + 8085 0.69 0.430476
Target:  5'- gGGCgUGGCGGGGcguggcagaGGGGGAgGgGgGGGg -3'
miRNA:   3'- aCUG-GCCGCCCC---------UCUCCUgCgCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 8137 0.71 0.302946
Target:  5'- cGcCCGGUGGGGGGGcGGGUGCaaagggGCGGGg -3'
miRNA:   3'- aCuGGCCGCCCCUCU-CCUGCG------CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 8179 0.66 0.565428
Target:  5'- gGACCucgGGCcGGGAccccGGGGGCGCucCGGGa -3'
miRNA:   3'- aCUGG---CCGcCCCU----CUCCUGCGc-GCCC- -5'
29642 5' -63.8 NC_006151.1 + 8237 0.79 0.088246
Target:  5'- --cCCGGCGGGGAGGGccgggccGGCGCGcCGGGa -3'
miRNA:   3'- acuGGCCGCCCCUCUC-------CUGCGC-GCCC- -5'
29642 5' -63.8 NC_006151.1 + 8383 0.66 0.57492
Target:  5'- --cCCGGgGGGGuccGGGAUGgGgGGGg -3'
miRNA:   3'- acuGGCCgCCCCuc-UCCUGCgCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 8495 0.76 0.146086
Target:  5'- gGGCgGGCGGGGAGGGuGucgucugugugucugUGCGCGGGg -3'
miRNA:   3'- aCUGgCCGCCCCUCUCcU---------------GCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 8612 0.75 0.175231
Target:  5'- gGGCCGGUGcGGGuguGAGGGuccUGUGCGGGu -3'
miRNA:   3'- aCUGGCCGC-CCCu--CUCCU---GCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 9321 0.66 0.603589
Target:  5'- cGGCaccacaGGCGGGaGcGGGGuCGCuCGGGg -3'
miRNA:   3'- aCUGg-----CCGCCC-CuCUCCuGCGcGCCC- -5'
29642 5' -63.8 NC_006151.1 + 9370 0.72 0.259564
Target:  5'- cGACaGGCGacaGGAGGGGGCcccccGCGCGGGu -3'
miRNA:   3'- aCUGgCCGCc--CCUCUCCUG-----CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 9491 0.79 0.092989
Target:  5'- cGGCCgcGGCGuGGGAGAgcgGGGCGUGUGGGg -3'
miRNA:   3'- aCUGG--CCGC-CCCUCU---CCUGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 9620 0.75 0.165902
Target:  5'- gGGCCGGCGgcgaggggggaagcGGGAGGGaGAgGCGCGGc -3'
miRNA:   3'- aCUGGCCGC--------------CCCUCUC-CUgCGCGCCc -5'
29642 5' -63.8 NC_006151.1 + 10082 0.68 0.482426
Target:  5'- gGAaaGGCGGGcGGAGGAaG-GCGGGu -3'
miRNA:   3'- aCUggCCGCCCcUCUCCUgCgCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 10354 0.66 0.564481
Target:  5'- gGACgCGGgaGGGGAGGGGAgGgaggggaggggguCGgGGGg -3'
miRNA:   3'- aCUG-GCCg-CCCCUCUCCUgC-------------GCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 10399 0.7 0.366612
Target:  5'- gGAggGGgGGGGAGAGcgggguGACGCcGCGGGu -3'
miRNA:   3'- aCUggCCgCCCCUCUC------CUGCG-CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 10439 0.85 0.034582
Target:  5'- aGGCCGGCGGGGAgggaggaggagGAGGACGCgGCGGcGg -3'
miRNA:   3'- aCUGGCCGCCCCU-----------CUCCUGCG-CGCC-C- -5'
29642 5' -63.8 NC_006151.1 + 10914 0.66 0.583494
Target:  5'- gGACCGGgguCGGGcccacggcgccgaGGGuGGGCGCGCGu- -3'
miRNA:   3'- aCUGGCC---GCCC-------------CUCuCCUGCGCGCcc -5'
29642 5' -63.8 NC_006151.1 + 11040 0.68 0.447435
Target:  5'- cGGCCGGCcGGGGGcccggccuGGACGCG-GGc -3'
miRNA:   3'- aCUGGCCGcCCCUCu-------CCUGCGCgCCc -5'
29642 5' -63.8 NC_006151.1 + 11711 0.7 0.344404
Target:  5'- cGugCGGCGcGGaacGAGAGGGgGgaGCGGGg -3'
miRNA:   3'- aCugGCCGC-CC---CUCUCCUgCg-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.