miRNA display CGI


Results 1 - 20 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 5' -63.8 NC_006151.1 + 142292 0.68 0.473551
Target:  5'- aGACCGGcCGGGacGAGAGcGA-GCGCcguauGGGg -3'
miRNA:   3'- aCUGGCC-GCCC--CUCUC-CUgCGCG-----CCC- -5'
29642 5' -63.8 NC_006151.1 + 141701 0.67 0.525145
Target:  5'- cGGCUGGCGGcggacgcggugcccGGGGcguuaauacccAGGGCggagggGCGCGGGg -3'
miRNA:   3'- aCUGGCCGCC--------------CCUC-----------UCCUG------CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 140443 0.66 0.584448
Target:  5'- gUGcCCGGCGccugccucggcGGGAucauGGACGCGCuGGa -3'
miRNA:   3'- -ACuGGCCGC-----------CCCUcu--CCUGCGCGcCC- -5'
29642 5' -63.8 NC_006151.1 + 139643 0.68 0.438908
Target:  5'- -cGCCGGCGcGGGGGucgcggcGGGCGCGCc-- -3'
miRNA:   3'- acUGGCCGC-CCCUCu------CCUGCGCGccc -5'
29642 5' -63.8 NC_006151.1 + 137589 0.7 0.374231
Target:  5'- cGACgaGGuCGGGGucgggaucGGGGGCGCggGCGGGg -3'
miRNA:   3'- aCUGg-CC-GCCCCu-------CUCCUGCG--CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 137105 0.72 0.277505
Target:  5'- -uGCUGGcCGGGGAcgccuGGGGGCGCGCGa- -3'
miRNA:   3'- acUGGCC-GCCCCU-----CUCCUGCGCGCcc -5'
29642 5' -63.8 NC_006151.1 + 135100 0.76 0.151829
Target:  5'- gGGCCgGGCGGGcGGcGGuaGCGCGCGGGg -3'
miRNA:   3'- aCUGG-CCGCCCcUCuCC--UGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 134997 0.7 0.359101
Target:  5'- gGGCgcgucuUGGCGGGGgcgcgGGGGGGCaGCaGCGGGg -3'
miRNA:   3'- aCUG------GCCGCCCC-----UCUCCUG-CG-CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 134726 0.65 0.61223
Target:  5'- gUGGCCuucgcGCGGGacuuugucgccccGAGcAGcGCGCGCGGGg -3'
miRNA:   3'- -ACUGGc----CGCCC-------------CUC-UCcUGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 133976 0.66 0.57492
Target:  5'- cGGCCccuCGGuGGAGAcgauGGAagagaGCGCGGGg -3'
miRNA:   3'- aCUGGcc-GCC-CCUCU----CCUg----CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 133740 0.67 0.527923
Target:  5'- cGAgCGaGUGGGGuc-GGGCGCGUGcGGa -3'
miRNA:   3'- aCUgGC-CGCCCCucuCCUGCGCGC-CC- -5'
29642 5' -63.8 NC_006151.1 + 133402 0.7 0.351698
Target:  5'- gGGCCGaGCGGGcGGucuuggccgcGGACGCGgGGGu -3'
miRNA:   3'- aCUGGC-CGCCCcUCu---------CCUGCGCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 131945 0.67 0.518686
Target:  5'- -aGCUGGCcacGGGcGAGGGCGgGCGGc -3'
miRNA:   3'- acUGGCCGc--CCCuCUCCUGCgCGCCc -5'
29642 5' -63.8 NC_006151.1 + 131705 0.7 0.359101
Target:  5'- uUGAgCGcgucGCGGGGGauGAGGugGUagGCGGGg -3'
miRNA:   3'- -ACUgGC----CGCCCCU--CUCCugCG--CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 131103 0.71 0.296422
Target:  5'- --gUCGGCGGGGGGcccGGccGCgGCGCGGGa -3'
miRNA:   3'- acuGGCCGCCCCUCu--CC--UG-CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 130943 0.79 0.092989
Target:  5'- gGGgCGGCGGGGGGucgcgcGGGCGCGgGGGc -3'
miRNA:   3'- aCUgGCCGCCCCUCu-----CCUGCGCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 130265 0.66 0.584448
Target:  5'- aGGCCGGCGcGcGGccccGAGG-C-CGCGGGc -3'
miRNA:   3'- aCUGGCCGC-C-CCu---CUCCuGcGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 129792 0.68 0.479755
Target:  5'- -cGCCGGCGuGGGcccgcauGAGGcccgugagcgcggaGCGCGCGGcGg -3'
miRNA:   3'- acUGGCCGC-CCCu------CUCC--------------UGCGCGCC-C- -5'
29642 5' -63.8 NC_006151.1 + 129460 0.68 0.442308
Target:  5'- cGGCCgugGGCGGGacgaGcccguccagguccucGGAGGGCaGCGCGGGc -3'
miRNA:   3'- aCUGG---CCGCCC----C---------------UCUCCUG-CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 127365 0.73 0.226533
Target:  5'- -cGCCcugGGCGGGGAccgcgGGGGugGCGgGGGc -3'
miRNA:   3'- acUGG---CCGCCCCU-----CUCCugCGCgCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.