miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29642 5' -63.8 NC_006151.1 + 1611 0.66 0.580633
Target:  5'- cGAUgGGagaaggaggagaaGGGGAccgGGGGAC-CGCGGGa -3'
miRNA:   3'- aCUGgCCg------------CCCCU---CUCCUGcGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 117801 0.66 0.57492
Target:  5'- cGcCCGGCGGGGcGGGGccccACGCuuuaagacccgGcCGGGg -3'
miRNA:   3'- aCuGGCCGCCCCuCUCC----UGCG-----------C-GCCC- -5'
29642 5' -63.8 NC_006151.1 + 133976 0.66 0.57492
Target:  5'- cGGCCccuCGGuGGAGAcgauGGAagagaGCGCGGGg -3'
miRNA:   3'- aCUGGcc-GCC-CCUCU----CCUg----CGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 8383 0.66 0.57492
Target:  5'- --cCCGGgGGGGuccGGGAUGgGgGGGg -3'
miRNA:   3'- acuGGCCgCCCCuc-UCCUGCgCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 88584 0.66 0.57492
Target:  5'- cGcCCGGaaGGGcucaccgaAGAGGACGgGCGGc -3'
miRNA:   3'- aCuGGCCgcCCC--------UCUCCUGCgCGCCc -5'
29642 5' -63.8 NC_006151.1 + 44508 0.66 0.57492
Target:  5'- ----nGGUGGcGGuGGGGAaGCGCGGGc -3'
miRNA:   3'- acuggCCGCC-CCuCUCCUgCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 43358 0.66 0.57492
Target:  5'- aGGggGGgGGGGAGAGaGAC-CGuCGGGg -3'
miRNA:   3'- aCUggCCgCCCCUCUC-CUGcGC-GCCC- -5'
29642 5' -63.8 NC_006151.1 + 96846 0.66 0.573969
Target:  5'- gGAaagGGCGGGGAaaccgcgcccgccGGGcGcggcGCGCGCGGGg -3'
miRNA:   3'- aCUgg-CCGCCCCU-------------CUC-C----UGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 12339 0.66 0.565428
Target:  5'- gGAUUGGgGGaaGGAGGGGcggggaGCGCgaGCGGGa -3'
miRNA:   3'- aCUGGCCgCC--CCUCUCC------UGCG--CGCCC- -5'
29642 5' -63.8 NC_006151.1 + 75388 0.66 0.565428
Target:  5'- -uGCaCGGCGcGGGGcGGGugcgUGCGCGGGu -3'
miRNA:   3'- acUG-GCCGC-CCCUcUCCu---GCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 87802 0.66 0.565428
Target:  5'- gGAgaGG-GuGGGAGAGGGCGCGCc-- -3'
miRNA:   3'- aCUggCCgC-CCCUCUCCUGCGCGccc -5'
29642 5' -63.8 NC_006151.1 + 8179 0.66 0.565428
Target:  5'- gGACCucgGGCcGGGAccccGGGGGCGCucCGGGa -3'
miRNA:   3'- aCUGG---CCGcCCCU----CUCCUGCGc-GCCC- -5'
29642 5' -63.8 NC_006151.1 + 98202 0.66 0.565428
Target:  5'- -cGCCGcGCGGGGucGAGuGCGCgGCGGc -3'
miRNA:   3'- acUGGC-CGCCCCu-CUCcUGCG-CGCCc -5'
29642 5' -63.8 NC_006151.1 + 10354 0.66 0.564481
Target:  5'- gGACgCGGgaGGGGAGGGGAgGgaggggaggggguCGgGGGg -3'
miRNA:   3'- aCUG-GCCg-CCCCUCUCCUgC-------------GCgCCC- -5'
29642 5' -63.8 NC_006151.1 + 5841 0.66 0.555978
Target:  5'- aGGCCGGggaGGcugcGGAGGGGGacgaGCGCccGGGg -3'
miRNA:   3'- aCUGGCCg--CC----CCUCUCCUg---CGCG--CCC- -5'
29642 5' -63.8 NC_006151.1 + 57972 0.66 0.555978
Target:  5'- gUGAgCCGGUGGGcGGcGAGcGCGCcGCGGa -3'
miRNA:   3'- -ACU-GGCCGCCC-CU-CUCcUGCG-CGCCc -5'
29642 5' -63.8 NC_006151.1 + 19251 0.66 0.555978
Target:  5'- -aGCCGagcgcguggaaGCGGGGcucGuGGCGCGCGGGg -3'
miRNA:   3'- acUGGC-----------CGCCCCucuC-CUGCGCGCCC- -5'
29642 5' -63.8 NC_006151.1 + 77923 0.67 0.546573
Target:  5'- cGGCCguGGUGGugaaGGGcGGGCGCGCGGc -3'
miRNA:   3'- aCUGG--CCGCCc---CUCuCCUGCGCGCCc -5'
29642 5' -63.8 NC_006151.1 + 29470 0.67 0.546573
Target:  5'- -aGCgGGCGcgccGGGAGAGGaaaggGCGCGCuGGc -3'
miRNA:   3'- acUGgCCGC----CCCUCUCC-----UGCGCGcCC- -5'
29642 5' -63.8 NC_006151.1 + 64478 0.67 0.546573
Target:  5'- cGcCgCGGCGGGGAcgcccGcGGGCGCgggcgGCGGGc -3'
miRNA:   3'- aCuG-GCCGCCCCU-----CuCCUGCG-----CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.