miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29644 5' -46.4 NC_006151.1 + 28458 1.11 0.016355
Target:  5'- uAUCUUAUAUACCGCAAGUGCGAACGCu -3'
miRNA:   3'- -UAGAAUAUAUGGCGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 28737 1.11 0.016355
Target:  5'- uAUCUUAUAUACCGCAAGUGCGAACGCu -3'
miRNA:   3'- -UAGAAUAUAUGGCGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 29016 0.9 0.264149
Target:  5'- uAUCUUAUAUACaaCAAGUGCGAACGCu -3'
miRNA:   3'- -UAGAAUAUAUGgcGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 79510 0.84 0.531172
Target:  5'- uAUUUUAUAUACaaCAAGUGCGAACGCc -3'
miRNA:   3'- -UAGAAUAUAUGgcGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 93567 0.73 0.970482
Target:  5'- --------cGCCGCGGGgGCGGGCGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 76640 0.72 0.976284
Target:  5'- cAUCgUGUGgcgacgACCGC--GUGCGGGCGCg -3'
miRNA:   3'- -UAGaAUAUa-----UGGCGuuCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 22996 0.71 0.987094
Target:  5'- gAUCUcg---GCCGCGcgGGUGgGGGCGCg -3'
miRNA:   3'- -UAGAauauaUGGCGU--UCACgCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 71094 0.71 0.990151
Target:  5'- --------cGCCGCGGGcGCGGGCGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 13828 0.7 0.992608
Target:  5'- -aCUaGUAUAUauuaGCAauuGGUGCGAACGUg -3'
miRNA:   3'- uaGAaUAUAUGg---CGU---UCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 13549 0.7 0.992608
Target:  5'- -aCUaGUAUAUauuaGCAauuGGUGCGAACGUg -3'
miRNA:   3'- uaGAaUAUAUGg---CGU---UCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 57971 0.7 0.993639
Target:  5'- ----cGUGaGCCGguGGgcgGCGAGCGCg -3'
miRNA:   3'- uagaaUAUaUGGCguUCa--CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 132009 0.7 0.995278
Target:  5'- cAUCUUGau--CCGCAccuGGUGCGAgagguagccggcgGCGCg -3'
miRNA:   3'- -UAGAAUauauGGCGU---UCACGCU-------------UGCG- -5'
29644 5' -46.4 NC_006151.1 + 112654 0.7 0.995354
Target:  5'- gAUCgacGUGUACCGUc---GCGAGCGCu -3'
miRNA:   3'- -UAGaa-UAUAUGGCGuucaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 22806 0.7 0.996058
Target:  5'- cGUCUccccgGCCGuCAGGUGCaggGGGCGCg -3'
miRNA:   3'- -UAGAauauaUGGC-GUUCACG---CUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 125391 0.7 0.996058
Target:  5'- cAUCgcg---GCCGCcuGGUGCGAGCuGCa -3'
miRNA:   3'- -UAGaauauaUGGCGu-UCACGCUUG-CG- -5'
29644 5' -46.4 NC_006151.1 + 32074 0.69 0.996672
Target:  5'- --------cGCCGCGAccgGCGAACGCa -3'
miRNA:   3'- uagaauauaUGGCGUUca-CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 122955 0.69 0.996672
Target:  5'- --------cGCCGCGGGgggcGCGGACGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCa---CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 130412 0.69 0.997665
Target:  5'- ---------cCCGCGAGcGCGGGCGCg -3'
miRNA:   3'- uagaauauauGGCGUUCaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 91077 0.69 0.997665
Target:  5'- aGUCgag---GCCGCGg--GCGAGCGCg -3'
miRNA:   3'- -UAGaauauaUGGCGUucaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 5081 0.69 0.99806
Target:  5'- --------gGCCGCGGGgccgcgGCGGGCGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCa-----CGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.