miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29644 5' -46.4 NC_006151.1 + 5081 0.69 0.99806
Target:  5'- --------gGCCGCGGGgccgcgGCGGGCGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCa-----CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 13549 0.7 0.992608
Target:  5'- -aCUaGUAUAUauuaGCAauuGGUGCGAACGUg -3'
miRNA:   3'- uaGAaUAUAUGg---CGU---UCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 13828 0.7 0.992608
Target:  5'- -aCUaGUAUAUauuaGCAauuGGUGCGAACGUg -3'
miRNA:   3'- uaGAaUAUAUGg---CGU---UCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 19238 0.66 0.999872
Target:  5'- --------aGCUGCGAGUGgaagcCGAGCGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCAC-----GCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 22806 0.7 0.996058
Target:  5'- cGUCUccccgGCCGuCAGGUGCaggGGGCGCg -3'
miRNA:   3'- -UAGAauauaUGGC-GUUCACG---CUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 22996 0.71 0.987094
Target:  5'- gAUCUcg---GCCGCGcgGGUGgGGGCGCg -3'
miRNA:   3'- -UAGAauauaUGGCGU--UCACgCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 25104 0.68 0.999129
Target:  5'- --aUUGU-UGCUGC--GUGCGAGCGCu -3'
miRNA:   3'- uagAAUAuAUGGCGuuCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 25289 0.66 0.999833
Target:  5'- -gCUUG---GCCGCGGGgacguggGCGAACGg -3'
miRNA:   3'- uaGAAUauaUGGCGUUCa------CGCUUGCg -5'
29644 5' -46.4 NC_006151.1 + 28458 1.11 0.016355
Target:  5'- uAUCUUAUAUACCGCAAGUGCGAACGCu -3'
miRNA:   3'- -UAGAAUAUAUGGCGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 28737 1.11 0.016355
Target:  5'- uAUCUUAUAUACCGCAAGUGCGAACGCu -3'
miRNA:   3'- -UAGAAUAUAUGGCGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 29016 0.9 0.264149
Target:  5'- uAUCUUAUAUACaaCAAGUGCGAACGCu -3'
miRNA:   3'- -UAGAAUAUAUGgcGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 30749 0.67 0.999647
Target:  5'- ------aGUGCCGCGGGcgggGCGGGgGCa -3'
miRNA:   3'- uagaauaUAUGGCGUUCa---CGCUUgCG- -5'
29644 5' -46.4 NC_006151.1 + 32074 0.69 0.996672
Target:  5'- --------cGCCGCGAccgGCGAACGCa -3'
miRNA:   3'- uagaauauaUGGCGUUca-CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 32786 0.68 0.999298
Target:  5'- --------gGCCGCGGGgggccgaaGCGGACGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCa-------CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 33118 0.66 0.999927
Target:  5'- gGUCUgggcgcGUGCCGCGggccgAGUGuCGGGCGa -3'
miRNA:   3'- -UAGAaua---UAUGGCGU-----UCAC-GCUUGCg -5'
29644 5' -46.4 NC_006151.1 + 37747 0.66 0.999903
Target:  5'- cUCUgggcccUGCCGCAcGcgGUGAGCGCc -3'
miRNA:   3'- uAGAauau--AUGGCGUuCa-CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 37955 0.67 0.999553
Target:  5'- ----cGUGccCCGCGAGcugGCGGACGCc -3'
miRNA:   3'- uagaaUAUauGGCGUUCa--CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 45354 0.67 0.999553
Target:  5'- ----cGUGUgGCC-CGAGUGUGAGCGUg -3'
miRNA:   3'- uagaaUAUA-UGGcGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 45421 0.67 0.999784
Target:  5'- uGUgUUGUGgGCCGgGGGUucGCGGGCGUc -3'
miRNA:   3'- -UAgAAUAUaUGGCgUUCA--CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 55425 0.66 0.999872
Target:  5'- --------cGCCGCGcAG-GCGGGCGCg -3'
miRNA:   3'- uagaauauaUGGCGU-UCaCGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.