miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29644 5' -46.4 NC_006151.1 + 141407 0.67 0.999723
Target:  5'- ----cGUGUcCgGCGaucGGUGCGGGCGCg -3'
miRNA:   3'- uagaaUAUAuGgCGU---UCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 136983 0.66 0.999833
Target:  5'- --------cGCCGCGccGGgcgGCGGGCGCg -3'
miRNA:   3'- uagaauauaUGGCGU--UCa--CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 136688 0.67 0.999647
Target:  5'- uUCUU-----CCGCcacGUGCGGGCGCa -3'
miRNA:   3'- uAGAAuauauGGCGuu-CACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 132009 0.7 0.995278
Target:  5'- cAUCUUGau--CCGCAccuGGUGCGAgagguagccggcgGCGCg -3'
miRNA:   3'- -UAGAAUauauGGCGU---UCACGCU-------------UGCG- -5'
29644 5' -46.4 NC_006151.1 + 131769 0.66 0.999872
Target:  5'- gGUCgcg---ACCGCGGccGCGGGCGCc -3'
miRNA:   3'- -UAGaauauaUGGCGUUcaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 130412 0.69 0.997665
Target:  5'- ---------cCCGCGAGcGCGGGCGCg -3'
miRNA:   3'- uagaauauauGGCGUUCaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 125391 0.7 0.996058
Target:  5'- cAUCgcg---GCCGCcuGGUGCGAGCuGCa -3'
miRNA:   3'- -UAGaauauaUGGCGu-UCACGCUUG-CG- -5'
29644 5' -46.4 NC_006151.1 + 122955 0.69 0.996672
Target:  5'- --------cGCCGCGGGgggcGCGGACGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCa---CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 120809 0.66 0.999872
Target:  5'- --------cGCCGCGcgcgaGGUGCuGGACGCg -3'
miRNA:   3'- uagaauauaUGGCGU-----UCACG-CUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 115204 0.66 0.999872
Target:  5'- --------cGCCGCGGGcGCGcGCGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCaCGCuUGCG- -5'
29644 5' -46.4 NC_006151.1 + 112654 0.7 0.995354
Target:  5'- gAUCgacGUGUACCGUc---GCGAGCGCu -3'
miRNA:   3'- -UAGaa-UAUAUGGCGuucaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 110903 0.66 0.999925
Target:  5'- -gCUUGUcgugcgcGUGCCGCAGGUucaCGAGgGCc -3'
miRNA:   3'- uaGAAUA-------UAUGGCGUUCAc--GCUUgCG- -5'
29644 5' -46.4 NC_006151.1 + 102592 0.67 0.999784
Target:  5'- ------aGUcCCGCGAGUcgcaGCGGGCGCu -3'
miRNA:   3'- uagaauaUAuGGCGUUCA----CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 100470 0.66 0.999872
Target:  5'- ----------gCGCGAGUGCGAgGCGCu -3'
miRNA:   3'- uagaauauaugGCGUUCACGCU-UGCG- -5'
29644 5' -46.4 NC_006151.1 + 98328 0.68 0.999298
Target:  5'- uUCUUcaugGCCGCGGGccGCGAgACGCc -3'
miRNA:   3'- uAGAAuauaUGGCGUUCa-CGCU-UGCG- -5'
29644 5' -46.4 NC_006151.1 + 94935 0.66 0.999872
Target:  5'- ----cGUGcuCCGCGA-UGCGGACGCg -3'
miRNA:   3'- uagaaUAUauGGCGUUcACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 93567 0.73 0.970482
Target:  5'- --------cGCCGCGGGgGCGGGCGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 91077 0.69 0.997665
Target:  5'- aGUCgag---GCCGCGg--GCGAGCGCg -3'
miRNA:   3'- -UAGaauauaUGGCGUucaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 90682 0.68 0.999298
Target:  5'- -gCUUGUcccccGCgGCGGGggcgGCGGACGCg -3'
miRNA:   3'- uaGAAUAua---UGgCGUUCa---CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 89502 0.67 0.999723
Target:  5'- ------gGUACgCGCGGGUGUG-GCGCa -3'
miRNA:   3'- uagaauaUAUG-GCGUUCACGCuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.