Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29644 | 5' | -46.4 | NC_006151.1 | + | 56579 | 0.68 | 0.998398 |
Target: 5'- --------cGCCGCccgacgggcuGGUGCGGACGCg -3' miRNA: 3'- uagaauauaUGGCGu---------UCACGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 56658 | 0.66 | 0.999833 |
Target: 5'- ----cGUGUACCGCuGGUGgaCGAcgGCGCc -3' miRNA: 3'- uagaaUAUAUGGCGuUCAC--GCU--UGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 57971 | 0.7 | 0.993639 |
Target: 5'- ----cGUGaGCCGguGGgcgGCGAGCGCg -3' miRNA: 3'- uagaaUAUaUGGCguUCa--CGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 58831 | 0.66 | 0.999903 |
Target: 5'- cGUCgcg---GCacaGCAGGUGCGccAGCGCg -3' miRNA: 3'- -UAGaauauaUGg--CGUUCACGC--UUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 71094 | 0.71 | 0.990151 |
Target: 5'- --------cGCCGCGGGcGCGGGCGCc -3' miRNA: 3'- uagaauauaUGGCGUUCaCGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 72915 | 0.68 | 0.998684 |
Target: 5'- cUCUUGgcgACCGCcucgGCGGGCGUg -3' miRNA: 3'- uAGAAUauaUGGCGuucaCGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 76640 | 0.72 | 0.976284 |
Target: 5'- cAUCgUGUGgcgacgACCGC--GUGCGGGCGCg -3' miRNA: 3'- -UAGaAUAUa-----UGGCGuuCACGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 79510 | 0.84 | 0.531172 |
Target: 5'- uAUUUUAUAUACaaCAAGUGCGAACGCc -3' miRNA: 3'- -UAGAAUAUAUGgcGUUCACGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 84763 | 0.68 | 0.998926 |
Target: 5'- --------cGCCGcCGAGgagGCGGACGCg -3' miRNA: 3'- uagaauauaUGGC-GUUCa--CGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 85067 | 0.67 | 0.999553 |
Target: 5'- --------cGCUGCAGGccUGCGGGCGCc -3' miRNA: 3'- uagaauauaUGGCGUUC--ACGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 86736 | 0.68 | 0.999298 |
Target: 5'- --------cGCCGCGAGgccgGCGuGCGCg -3' miRNA: 3'- uagaauauaUGGCGUUCa---CGCuUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 89502 | 0.67 | 0.999723 |
Target: 5'- ------gGUACgCGCGGGUGUG-GCGCa -3' miRNA: 3'- uagaauaUAUG-GCGUUCACGCuUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 90682 | 0.68 | 0.999298 |
Target: 5'- -gCUUGUcccccGCgGCGGGggcgGCGGACGCg -3' miRNA: 3'- uaGAAUAua---UGgCGUUCa---CGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 91077 | 0.69 | 0.997665 |
Target: 5'- aGUCgag---GCCGCGg--GCGAGCGCg -3' miRNA: 3'- -UAGaauauaUGGCGUucaCGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 93567 | 0.73 | 0.970482 |
Target: 5'- --------cGCCGCGGGgGCGGGCGCg -3' miRNA: 3'- uagaauauaUGGCGUUCaCGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 94935 | 0.66 | 0.999872 |
Target: 5'- ----cGUGcuCCGCGA-UGCGGACGCg -3' miRNA: 3'- uagaaUAUauGGCGUUcACGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 98328 | 0.68 | 0.999298 |
Target: 5'- uUCUUcaugGCCGCGGGccGCGAgACGCc -3' miRNA: 3'- uAGAAuauaUGGCGUUCa-CGCU-UGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 100470 | 0.66 | 0.999872 |
Target: 5'- ----------gCGCGAGUGCGAgGCGCu -3' miRNA: 3'- uagaauauaugGCGUUCACGCU-UGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 102592 | 0.67 | 0.999784 |
Target: 5'- ------aGUcCCGCGAGUcgcaGCGGGCGCu -3' miRNA: 3'- uagaauaUAuGGCGUUCA----CGCUUGCG- -5' |
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29644 | 5' | -46.4 | NC_006151.1 | + | 110903 | 0.66 | 0.999925 |
Target: 5'- -gCUUGUcgugcgcGUGCCGCAGGUucaCGAGgGCc -3' miRNA: 3'- uaGAAUA-------UAUGGCGUUCAc--GCUUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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