miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29644 5' -46.4 NC_006151.1 + 85067 0.67 0.999553
Target:  5'- --------cGCUGCAGGccUGCGGGCGCc -3'
miRNA:   3'- uagaauauaUGGCGUUC--ACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 37955 0.67 0.999553
Target:  5'- ----cGUGccCCGCGAGcugGCGGACGCc -3'
miRNA:   3'- uagaaUAUauGGCGUUCa--CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 45354 0.67 0.999553
Target:  5'- ----cGUGUgGCC-CGAGUGUGAGCGUg -3'
miRNA:   3'- uagaaUAUA-UGGcGUUCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 32786 0.68 0.999298
Target:  5'- --------gGCCGCGGGgggccgaaGCGGACGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCa-------CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 98328 0.68 0.999298
Target:  5'- uUCUUcaugGCCGCGGGccGCGAgACGCc -3'
miRNA:   3'- uAGAAuauaUGGCGUUCa-CGCU-UGCG- -5'
29644 5' -46.4 NC_006151.1 + 86736 0.68 0.999298
Target:  5'- --------cGCCGCGAGgccgGCGuGCGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCa---CGCuUGCG- -5'
29644 5' -46.4 NC_006151.1 + 90682 0.68 0.999298
Target:  5'- -gCUUGUcccccGCgGCGGGggcgGCGGACGCg -3'
miRNA:   3'- uaGAAUAua---UGgCGUUCa---CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 25104 0.68 0.999129
Target:  5'- --aUUGU-UGCUGC--GUGCGAGCGCu -3'
miRNA:   3'- uagAAUAuAUGGCGuuCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 84763 0.68 0.998926
Target:  5'- --------cGCCGcCGAGgagGCGGACGCg -3'
miRNA:   3'- uagaauauaUGGC-GUUCa--CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 72915 0.68 0.998684
Target:  5'- cUCUUGgcgACCGCcucgGCGGGCGUg -3'
miRNA:   3'- uAGAAUauaUGGCGuucaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 56579 0.68 0.998398
Target:  5'- --------cGCCGCccgacgggcuGGUGCGGACGCg -3'
miRNA:   3'- uagaauauaUGGCGu---------UCACGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 5081 0.69 0.99806
Target:  5'- --------gGCCGCGGGgccgcgGCGGGCGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCa-----CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 91077 0.69 0.997665
Target:  5'- aGUCgag---GCCGCGg--GCGAGCGCg -3'
miRNA:   3'- -UAGaauauaUGGCGUucaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 130412 0.69 0.997665
Target:  5'- ---------cCCGCGAGcGCGGGCGCg -3'
miRNA:   3'- uagaauauauGGCGUUCaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 122955 0.69 0.996672
Target:  5'- --------cGCCGCGGGgggcGCGGACGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCa---CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 32074 0.69 0.996672
Target:  5'- --------cGCCGCGAccgGCGAACGCa -3'
miRNA:   3'- uagaauauaUGGCGUUca-CGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 125391 0.7 0.996058
Target:  5'- cAUCgcg---GCCGCcuGGUGCGAGCuGCa -3'
miRNA:   3'- -UAGaauauaUGGCGu-UCACGCUUG-CG- -5'
29644 5' -46.4 NC_006151.1 + 22806 0.7 0.996058
Target:  5'- cGUCUccccgGCCGuCAGGUGCaggGGGCGCg -3'
miRNA:   3'- -UAGAauauaUGGC-GUUCACG---CUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 112654 0.7 0.995354
Target:  5'- gAUCgacGUGUACCGUc---GCGAGCGCu -3'
miRNA:   3'- -UAGaa-UAUAUGGCGuucaCGCUUGCG- -5'
29644 5' -46.4 NC_006151.1 + 132009 0.7 0.995278
Target:  5'- cAUCUUGau--CCGCAccuGGUGCGAgagguagccggcgGCGCg -3'
miRNA:   3'- -UAGAAUauauGGCGU---UCACGCU-------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.