Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29645 | 5' | -42.5 | NC_006151.1 | + | 74759 | 0.68 | 0.999998 |
Target: 5'- cUCUgg-AUGCAcugcgccACGAGccgcGCGAGCGCg -3' miRNA: 3'- uAGAauaUAUGU-------UGUUCa---CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 128222 | 0.66 | 1 |
Target: 5'- ------cGUGCGACGAGcucGUGGGCGCc -3' miRNA: 3'- uagaauaUAUGUUGUUCa--CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 56585 | 0.66 | 1 |
Target: 5'- ---------cCGACGggcuGGUGCGGACGCg -3' miRNA: 3'- uagaauauauGUUGU----UCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 65035 | 0.66 | 1 |
Target: 5'- ------cGUACGGCAGGgggcccggcggcgGCGGGCGCc -3' miRNA: 3'- uagaauaUAUGUUGUUCa------------CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 76791 | 0.66 | 1 |
Target: 5'- aGUCggcgccGUACAgcgccccgGCGAGgGCGGGCGCg -3' miRNA: 3'- -UAGaaua--UAUGU--------UGUUCaCGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 73935 | 0.67 | 1 |
Target: 5'- ------gGUGCAGCGAgccgucGUGCGuGCGCa -3' miRNA: 3'- uagaauaUAUGUUGUU------CACGCuUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 70160 | 0.67 | 1 |
Target: 5'- ------cGUGC-ACGAGcGCGGGCGCg -3' miRNA: 3'- uagaauaUAUGuUGUUCaCGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 115017 | 0.67 | 1 |
Target: 5'- -gCUUGUGguagACgGugAGGUGCGGcagGCGCg -3' miRNA: 3'- uaGAAUAUa---UG-UugUUCACGCU---UGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 141685 | 0.66 | 1 |
Target: 5'- uGUCUgccucccacgGCGGCuGGcgGCGGACGCg -3' miRNA: 3'- -UAGAauaua-----UGUUGuUCa-CGCUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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