miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 49671 0.67 0.896987
Target:  5'- gGCCGcgCCCGGAGGa---CGcGGACgCGCc -3'
miRNA:   3'- -UGGCa-GGGCCUUUaaagGC-CCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 102032 0.67 0.896987
Target:  5'- cGCCGUCCgGGAGcuggagCUGGccCCGCu -3'
miRNA:   3'- -UGGCAGGgCCUUuaaa--GGCCcuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 5842 0.67 0.894378
Target:  5'- gGCCGgggaggCUgCGGAGGgggacgagcgcCCGGGGCCGCc -3'
miRNA:   3'- -UGGCa-----GG-GCCUUUaaa--------GGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 21668 0.67 0.890397
Target:  5'- cACC-UCCCGGug----CgGGGGCUGCu -3'
miRNA:   3'- -UGGcAGGGCCuuuaaaGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 76922 0.67 0.890397
Target:  5'- uCCgGUCCCGGGccAcgUUCCGcgccacgaGGACgGCg -3'
miRNA:   3'- uGG-CAGGGCCU--UuaAAGGC--------CCUGgCG- -5'
29646 3' -55.4 NC_006151.1 + 83687 0.67 0.890397
Target:  5'- uGCCGUUCUGc----UUCCGGGuCUGCg -3'
miRNA:   3'- -UGGCAGGGCcuuuaAAGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 3671 0.67 0.889052
Target:  5'- cGCCGUcCCCGGGGcggcgggccCCGGG-CgCGCg -3'
miRNA:   3'- -UGGCA-GGGCCUUuaaa-----GGCCCuG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 88387 0.67 0.883583
Target:  5'- aGCgCGUCCgCGGcg---UCCGcGGCCGCg -3'
miRNA:   3'- -UG-GCAGG-GCCuuuaaAGGCcCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 39640 0.67 0.883583
Target:  5'- cGCCGggcCCCGGAcc---CCGGucCCGCu -3'
miRNA:   3'- -UGGCa--GGGCCUuuaaaGGCCcuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 20172 0.67 0.883583
Target:  5'- gGCCGcgCCCGGGucgcggccgguaGAUgcgaUUCCGcgcgcagcgccGGGCCGCg -3'
miRNA:   3'- -UGGCa-GGGCCU------------UUA----AAGGC-----------CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 103705 0.68 0.876548
Target:  5'- cGCCGUggagcaCCCGGAGcugggcUUCCuGGAgCCGCu -3'
miRNA:   3'- -UGGCA------GGGCCUUua----AAGGcCCU-GGCG- -5'
29646 3' -55.4 NC_006151.1 + 28558 0.68 0.876548
Target:  5'- aGCCGUgCCCGcGuc----CCGGGAgcCCGCa -3'
miRNA:   3'- -UGGCA-GGGC-CuuuaaaGGCCCU--GGCG- -5'
29646 3' -55.4 NC_006151.1 + 1800 0.68 0.869298
Target:  5'- cACCGggCCGGGGAggcaggcgCCGGGgaggcaagcGCCGCc -3'
miRNA:   3'- -UGGCagGGCCUUUaaa-----GGCCC---------UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 5015 0.68 0.869298
Target:  5'- gGCCGggcgggCuCCGGGg----CCGGGGCCGg -3'
miRNA:   3'- -UGGCa-----G-GGCCUuuaaaGGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 11518 0.68 0.869298
Target:  5'- cCCG-CCCGcGGcac-UCCGGGcCCGCg -3'
miRNA:   3'- uGGCaGGGC-CUuuaaAGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 28592 0.68 0.869298
Target:  5'- gGCgCGUCCcCGGAGG----CGGGuGCCGCg -3'
miRNA:   3'- -UG-GCAGG-GCCUUUaaagGCCC-UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 28873 0.68 0.869298
Target:  5'- gGCgCGUCCcCGGAGG----CGGGuGCCGCg -3'
miRNA:   3'- -UG-GCAGG-GCCUUUaaagGCCC-UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 87322 0.68 0.869298
Target:  5'- cGCCGUgCCGGcgcuc-CCGGGcCUGCc -3'
miRNA:   3'- -UGGCAgGGCCuuuaaaGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 4885 0.68 0.861837
Target:  5'- gGCCGUCggCCGGAGGgucggagCCGGG-CCa- -3'
miRNA:   3'- -UGGCAG--GGCCUUUaaa----GGCCCuGGcg -5'
29646 3' -55.4 NC_006151.1 + 48043 0.68 0.861837
Target:  5'- cUCuUUCCGGAGAUaaaagCCGGGAcccCCGCg -3'
miRNA:   3'- uGGcAGGGCCUUUAaa---GGCCCU---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.