Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29646 | 3' | -55.4 | NC_006151.1 | + | 77465 | 0.66 | 0.92104 |
Target: 5'- cGCUG-CgCGGGAAcgcgcCCGGGaACCGCg -3' miRNA: 3'- -UGGCaGgGCCUUUaaa--GGCCC-UGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 30571 | 0.66 | 0.92104 |
Target: 5'- cGCCGUCCCGcGGccccgUCgggcgcaGGGAUCGUa -3' miRNA: 3'- -UGGCAGGGC-CUuuaa-AGg------CCCUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 69382 | 0.66 | 0.915377 |
Target: 5'- cGCCGUCagcggCCGGggGUc-CUGGGGCgugaGCa -3' miRNA: 3'- -UGGCAG-----GGCCuuUAaaGGCCCUGg---CG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 18657 | 0.66 | 0.915377 |
Target: 5'- aGCCG-CCCGGgcGUcgUCCGG--CCGUa -3' miRNA: 3'- -UGGCaGGGCCuuUAa-AGGCCcuGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 4835 | 0.67 | 0.909479 |
Target: 5'- cUCGUCCCagagccccucgcGGGAGUccCCGGcGCCGCc -3' miRNA: 3'- uGGCAGGG------------CCUUUAaaGGCCcUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 96916 | 0.67 | 0.909479 |
Target: 5'- gGCgGgacaagCCGGGAcgggCCGGGAUCGCg -3' miRNA: 3'- -UGgCag----GGCCUUuaaaGGCCCUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 138612 | 0.67 | 0.909479 |
Target: 5'- uGCCG-CUCGGcGAggacgccgCCGGGGgCGCg -3' miRNA: 3'- -UGGCaGGGCCuUUaaa-----GGCCCUgGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 2403 | 0.67 | 0.909479 |
Target: 5'- gGCCGcggagCUCGGcGAggccCCGGcGGCCGCa -3' miRNA: 3'- -UGGCa----GGGCCuUUaaa-GGCC-CUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 27343 | 0.67 | 0.909479 |
Target: 5'- cCCGggaCCGGGGucGUgggCCGGGGCCcggGCg -3' miRNA: 3'- uGGCag-GGCCUU--UAaa-GGCCCUGG---CG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 37731 | 0.67 | 0.909479 |
Target: 5'- gGCCG-CCCaGGAcccgcUCUGGGcccuGCCGCa -3' miRNA: 3'- -UGGCaGGG-CCUuuaa-AGGCCC----UGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 81084 | 0.67 | 0.909479 |
Target: 5'- uCCGUCgCCGGcAGgugCUGGGACUcggGCa -3' miRNA: 3'- uGGCAG-GGCCuUUaaaGGCCCUGG---CG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 101822 | 0.67 | 0.909479 |
Target: 5'- cGCCGUCCCcg-----UCuCGGcGGCCGCc -3' miRNA: 3'- -UGGCAGGGccuuuaaAG-GCC-CUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 36911 | 0.67 | 0.907055 |
Target: 5'- cGCCG-CgCCGGAGAggcgcccuccgCCGcGGCCGCg -3' miRNA: 3'- -UGGCaG-GGCCUUUaaa--------GGCcCUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 81759 | 0.67 | 0.903348 |
Target: 5'- aGCUgGUCCgCGGGcgccaCCGGGACgCGCu -3' miRNA: 3'- -UGG-CAGG-GCCUuuaaaGGCCCUG-GCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 107531 | 0.67 | 0.900831 |
Target: 5'- cGCCGUuggcCCCGGcggccccgCCGGcGCCGCc -3' miRNA: 3'- -UGGCA----GGGCCuuuaaa--GGCCcUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 87255 | 0.67 | 0.899559 |
Target: 5'- cGCUGUaCCCGccGAUguacgccccccagCCGGGGCUGCa -3' miRNA: 3'- -UGGCA-GGGCcuUUAaa-----------GGCCCUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 49671 | 0.67 | 0.896987 |
Target: 5'- gGCCGcgCCCGGAGGa---CGcGGACgCGCc -3' miRNA: 3'- -UGGCa-GGGCCUUUaaagGC-CCUG-GCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 85438 | 0.67 | 0.896987 |
Target: 5'- aACCGcgCCgCGGccgccUUCCuGGGCCGCg -3' miRNA: 3'- -UGGCa-GG-GCCuuua-AAGGcCCUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 84814 | 0.67 | 0.896987 |
Target: 5'- gACCGcggCCgCGGA------CGGGGCCGCg -3' miRNA: 3'- -UGGCa--GG-GCCUuuaaagGCCCUGGCG- -5' |
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29646 | 3' | -55.4 | NC_006151.1 | + | 646 | 0.67 | 0.896987 |
Target: 5'- cGCCGgcUUCCGGGGcgcggCCGGGGcgggcuCCGCg -3' miRNA: 3'- -UGGC--AGGGCCUUuaaa-GGCCCU------GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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