miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 126063 0.66 0.936611
Target:  5'- gUgGUCCUGGGugccaCgGGGGCCGUg -3'
miRNA:   3'- uGgCAGGGCCUuuaaaGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 100877 0.66 0.931657
Target:  5'- cGCCGUgaaCCUGGAGGUgcugcgCCGcGGCgCGCg -3'
miRNA:   3'- -UGGCA---GGGCCUUUAaa----GGCcCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 75644 0.66 0.931657
Target:  5'- uGCCGUCgUCGGggG---CCGGcucGCCGCc -3'
miRNA:   3'- -UGGCAG-GGCCuuUaaaGGCCc--UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 49156 0.66 0.931657
Target:  5'- gGCUG-CCUGGAGGc--CUGGGcgcGCCGCg -3'
miRNA:   3'- -UGGCaGGGCCUUUaaaGGCCC---UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 81759 0.67 0.903348
Target:  5'- aGCUgGUCCgCGGGcgccaCCGGGACgCGCu -3'
miRNA:   3'- -UGG-CAGG-GCCUuuaaaGGCCCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 107531 0.67 0.900831
Target:  5'- cGCCGUuggcCCCGGcggccccgCCGGcGCCGCc -3'
miRNA:   3'- -UGGCA----GGGCCuuuaaa--GGCCcUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 87255 0.67 0.899559
Target:  5'- cGCUGUaCCCGccGAUguacgccccccagCCGGGGCUGCa -3'
miRNA:   3'- -UGGCA-GGGCcuUUAaa-----------GGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 102032 0.67 0.896987
Target:  5'- cGCCGUCCgGGAGcuggagCUGGccCCGCu -3'
miRNA:   3'- -UGGCAGGgCCUUuaaa--GGCCcuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 49671 0.67 0.896987
Target:  5'- gGCCGcgCCCGGAGGa---CGcGGACgCGCc -3'
miRNA:   3'- -UGGCa-GGGCCUUUaaagGC-CCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 85438 0.67 0.896987
Target:  5'- aACCGcgCCgCGGccgccUUCCuGGGCCGCg -3'
miRNA:   3'- -UGGCa-GG-GCCuuua-AAGGcCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 84814 0.67 0.896987
Target:  5'- gACCGcggCCgCGGA------CGGGGCCGCg -3'
miRNA:   3'- -UGGCa--GG-GCCUuuaaagGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 36911 0.67 0.907055
Target:  5'- cGCCG-CgCCGGAGAggcgcccuccgCCGcGGCCGCg -3'
miRNA:   3'- -UGGCaG-GGCCUUUaaa--------GGCcCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 4835 0.67 0.909479
Target:  5'- cUCGUCCCagagccccucgcGGGAGUccCCGGcGCCGCc -3'
miRNA:   3'- uGGCAGGG------------CCUUUAaaGGCCcUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 96916 0.67 0.909479
Target:  5'- gGCgGgacaagCCGGGAcgggCCGGGAUCGCg -3'
miRNA:   3'- -UGgCag----GGCCUUuaaaGGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 138612 0.67 0.909479
Target:  5'- uGCCG-CUCGGcGAggacgccgCCGGGGgCGCg -3'
miRNA:   3'- -UGGCaGGGCCuUUaaa-----GGCCCUgGCG- -5'
29646 3' -55.4 NC_006151.1 + 2403 0.67 0.909479
Target:  5'- gGCCGcggagCUCGGcGAggccCCGGcGGCCGCa -3'
miRNA:   3'- -UGGCa----GGGCCuUUaaa-GGCC-CUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 27343 0.67 0.909479
Target:  5'- cCCGggaCCGGGGucGUgggCCGGGGCCcggGCg -3'
miRNA:   3'- uGGCag-GGCCUU--UAaa-GGCCCUGG---CG- -5'
29646 3' -55.4 NC_006151.1 + 37731 0.67 0.909479
Target:  5'- gGCCG-CCCaGGAcccgcUCUGGGcccuGCCGCa -3'
miRNA:   3'- -UGGCaGGG-CCUuuaa-AGGCCC----UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 81084 0.67 0.909479
Target:  5'- uCCGUCgCCGGcAGgugCUGGGACUcggGCa -3'
miRNA:   3'- uGGCAG-GGCCuUUaaaGGCCCUGG---CG- -5'
29646 3' -55.4 NC_006151.1 + 646 0.67 0.896987
Target:  5'- cGCCGgcUUCCGGGGcgcggCCGGGGcgggcuCCGCg -3'
miRNA:   3'- -UGGC--AGGGCCUUuaaa-GGCCCU------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.