miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 13187 0.71 0.699728
Target:  5'- gGCCGUCUCGGGGc---CCGcGGcGCCGCc -3'
miRNA:   3'- -UGGCAGGGCCUUuaaaGGC-CC-UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13451 0.71 0.699728
Target:  5'- gGCCgGUCCCGGAcgcccgUCCcgcgggccGGACCGCc -3'
miRNA:   3'- -UGG-CAGGGCCUuuaa--AGGc-------CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13732 0.71 0.699728
Target:  5'- gGCCgGUCCCGGAcgcccgUCCcgcgggccGGACCGCc -3'
miRNA:   3'- -UGG-CAGGGCCUuuaa--AGGc-------CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 129683 0.71 0.699728
Target:  5'- cACCGU-CCGGccg---CCGuGGACCGCg -3'
miRNA:   3'- -UGGCAgGGCCuuuaaaGGC-CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 79739 0.71 0.709691
Target:  5'- cGCCGUCCCGucGAA---UCCaGGcCCGCg -3'
miRNA:   3'- -UGGCAGGGC--CUUuaaAGGcCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 40066 0.71 0.717614
Target:  5'- cACCGgCCCGcGggGgccucgggcgCCGGGGCCGg -3'
miRNA:   3'- -UGGCaGGGC-CuuUaaa-------GGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 127372 0.71 0.719588
Target:  5'- gGCgGggaCCgCGGggGUggCgGGGGCCGCg -3'
miRNA:   3'- -UGgCa--GG-GCCuuUAaaGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 1118 0.71 0.729412
Target:  5'- cCCG-CCCGGGAcca-CCGGGACCc- -3'
miRNA:   3'- uGGCaGGGCCUUuaaaGGCCCUGGcg -5'
29646 3' -55.4 NC_006151.1 + 81566 0.71 0.733318
Target:  5'- gGCCGUggUgCGGAGcagggucucgcgcgcGUcgCCGGGGCCGCc -3'
miRNA:   3'- -UGGCA--GgGCCUU---------------UAaaGGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 86339 0.7 0.739152
Target:  5'- cGCCGUgggCCCGGAcuucUUCgGGGACaUGCg -3'
miRNA:   3'- -UGGCA---GGGCCUuua-AAGgCCCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 7712 0.7 0.739152
Target:  5'- cGCCGUCggaCCGGGGA---CCGGcGACCGg -3'
miRNA:   3'- -UGGCAG---GGCCUUUaaaGGCC-CUGGCg -5'
29646 3' -55.4 NC_006151.1 + 132830 0.7 0.745916
Target:  5'- gGCCGcCCgCGGGAcggccaccacgggcGgccggcCCGGGGCCGCg -3'
miRNA:   3'- -UGGCaGG-GCCUU--------------Uaaa---GGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 50882 0.7 0.7488
Target:  5'- cCCGUCCCGGGg----CCGG--CCGCg -3'
miRNA:   3'- uGGCAGGGCCUuuaaaGGCCcuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 14647 0.7 0.7488
Target:  5'- gGCCGggCUCGGGuccggUUCCGGGuCgGCg -3'
miRNA:   3'- -UGGCa-GGGCCUuua--AAGGCCCuGgCG- -5'
29646 3' -55.4 NC_006151.1 + 13965 0.7 0.758347
Target:  5'- cGCCGgCCaugGGGGAg--CCGGGcCCGCg -3'
miRNA:   3'- -UGGCaGGg--CCUUUaaaGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 88857 0.7 0.767783
Target:  5'- aGCCGcUCCCGcGGGAgcUCCGGG--CGCg -3'
miRNA:   3'- -UGGC-AGGGC-CUUUaaAGGCCCugGCG- -5'
29646 3' -55.4 NC_006151.1 + 8970 0.7 0.786289
Target:  5'- cGCgCGcCCCGGGAAgggUCGGGcgaugGCCGCc -3'
miRNA:   3'- -UG-GCaGGGCCUUUaaaGGCCC-----UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 21549 0.69 0.794443
Target:  5'- gGCCGgggCCUGGGccucggcGAgcccgCCGaGGGCCGCg -3'
miRNA:   3'- -UGGCa--GGGCCU-------UUaaa--GGC-CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13405 0.69 0.795341
Target:  5'- cGCCGgCCaaugGGGGAg--CCGGGcCCGCg -3'
miRNA:   3'- -UGGCaGGg---CCUUUaaaGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 87204 0.69 0.795341
Target:  5'- uGCCG-CCCGGGGccgUCgUGGGAcacCCGCa -3'
miRNA:   3'- -UGGCaGGGCCUUuaaAG-GCCCU---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.