miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 29099 1.12 0.002254
Target:  5'- gACCGUCCCGGAAAUUUCCGGGACCGCa -3'
miRNA:   3'- -UGGCAGGGCCUUUAAAGGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13154 0.93 0.039271
Target:  5'- uGCgGUCCCGGAAAUUUCCGGGacggucGCCGCg -3'
miRNA:   3'- -UGgCAGGGCCUUUAAAGGCCC------UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 5927 0.8 0.273068
Target:  5'- gGCCGgggCCCGGAGccggcCCGGGACCGg -3'
miRNA:   3'- -UGGCa--GGGCCUUuaaa-GGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 129526 0.75 0.480378
Target:  5'- uGCCG-CCgaCGGggGggcCCGGGGCCGCc -3'
miRNA:   3'- -UGGCaGG--GCCuuUaaaGGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 5400 0.75 0.488883
Target:  5'- cGCCGUCCcCGGcgaggccGAGUccguccucguccUUCuCGGGGCCGCg -3'
miRNA:   3'- -UGGCAGG-GCC-------UUUA------------AAG-GCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 11212 0.74 0.518691
Target:  5'- gGCgCGUCCgGGAAGgcuucUCCcGGGCCGCg -3'
miRNA:   3'- -UG-GCAGGgCCUUUaa---AGGcCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13000 0.74 0.568161
Target:  5'- cCCGUCCCGGggGaUUCCcugucccucGGGG-CGCg -3'
miRNA:   3'- uGGCAGGGCCuuUaAAGG---------CCCUgGCG- -5'
29646 3' -55.4 NC_006151.1 + 18771 0.73 0.578212
Target:  5'- cCCGgggCCCGGG-----CCGGGGCCGUc -3'
miRNA:   3'- uGGCa--GGGCCUuuaaaGGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 8377 0.73 0.588302
Target:  5'- cCCGccCCCGGggGggUCCGGGAUgGg -3'
miRNA:   3'- uGGCa-GGGCCuuUaaAGGCCCUGgCg -5'
29646 3' -55.4 NC_006151.1 + 113097 0.73 0.598422
Target:  5'- cGCCGcCaCCGGggG----CGGGGCCGCg -3'
miRNA:   3'- -UGGCaG-GGCCuuUaaagGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 141603 0.73 0.598422
Target:  5'- aGCCG-CCCGGcGAggcugCCGGGAUCGg -3'
miRNA:   3'- -UGGCaGGGCCuUUaaa--GGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 16859 0.73 0.598422
Target:  5'- uGCCGUCuaGGAGAUgguacaUCgCGGGGCgCGCu -3'
miRNA:   3'- -UGGCAGggCCUUUAa-----AG-GCCCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 28517 0.73 0.61873
Target:  5'- uCCGgCCCGcGGGAcgggcgUCCGGGACCGg -3'
miRNA:   3'- uGGCaGGGC-CUUUaa----AGGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 28798 0.73 0.61873
Target:  5'- uCCGgCCCGcGGGAcgggcgUCCGGGACCGg -3'
miRNA:   3'- uGGCaGGGC-CUUUaa----AGGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 36321 0.72 0.628903
Target:  5'- gGCCccgGUCCCGGGccggcUCCGGGccccgGCCGCc -3'
miRNA:   3'- -UGG---CAGGGCCUuuaa-AGGCCC-----UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 134121 0.72 0.639078
Target:  5'- -gUGUgCCGGAG---UCCGGGGCCGg -3'
miRNA:   3'- ugGCAgGGCCUUuaaAGGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 133009 0.72 0.639078
Target:  5'- uCCG-CCCGGggGUgcucucgUCCaGGACgGCg -3'
miRNA:   3'- uGGCaGGGCCuuUAa------AGGcCCUGgCG- -5'
29646 3' -55.4 NC_006151.1 + 130911 0.72 0.649248
Target:  5'- cGCCGUCgUCGGugg---CCGGGcCCGCg -3'
miRNA:   3'- -UGGCAG-GGCCuuuaaaGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 79632 0.72 0.658389
Target:  5'- cGCCGUcgccgcuggauccCCCGGAccagGAUcgUCgUGGGACCGCc -3'
miRNA:   3'- -UGGCA-------------GGGCCU----UUAa-AG-GCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 142277 0.72 0.662447
Target:  5'- cCCGUCCCGGcggccagaccggCCGGGACgagaGCg -3'
miRNA:   3'- uGGCAGGGCCuuuaaa------GGCCCUGg---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.