miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 646 0.67 0.896987
Target:  5'- cGCCGgcUUCCGGGGcgcggCCGGGGcgggcuCCGCg -3'
miRNA:   3'- -UGGC--AGGGCCUUuaaa-GGCCCU------GGCG- -5'
29646 3' -55.4 NC_006151.1 + 1118 0.71 0.729412
Target:  5'- cCCG-CCCGGGAcca-CCGGGACCc- -3'
miRNA:   3'- uGGCaGGGCCUUuaaaGGCCCUGGcg -5'
29646 3' -55.4 NC_006151.1 + 1800 0.68 0.869298
Target:  5'- cACCGggCCGGGGAggcaggcgCCGGGgaggcaagcGCCGCc -3'
miRNA:   3'- -UGGCagGGCCUUUaaa-----GGCCC---------UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 2403 0.67 0.909479
Target:  5'- gGCCGcggagCUCGGcGAggccCCGGcGGCCGCa -3'
miRNA:   3'- -UGGCa----GGGCCuUUaaa-GGCC-CUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 2874 0.66 0.939939
Target:  5'- gGCCGUCCgCGGGccaguccucgauGGUguccagcacgaugagCCGGcGCCGCg -3'
miRNA:   3'- -UGGCAGG-GCCU------------UUAaa-------------GGCCcUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 3671 0.67 0.889052
Target:  5'- cGCCGUcCCCGGGGcggcgggccCCGGG-CgCGCg -3'
miRNA:   3'- -UGGCA-GGGCCUUuaaa-----GGCCCuG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 3718 0.66 0.94133
Target:  5'- cGCCG-CUCGGGcgcugggUCCGGGcCgGCg -3'
miRNA:   3'- -UGGCaGGGCCUuuaa---AGGCCCuGgCG- -5'
29646 3' -55.4 NC_006151.1 + 4144 0.69 0.821589
Target:  5'- gGCCGgcCCCGGGGAUcgcgUCGcGGAgCGCg -3'
miRNA:   3'- -UGGCa-GGGCCUUUAaa--GGC-CCUgGCG- -5'
29646 3' -55.4 NC_006151.1 + 4835 0.67 0.909479
Target:  5'- cUCGUCCCagagccccucgcGGGAGUccCCGGcGCCGCc -3'
miRNA:   3'- uGGCAGGG------------CCUUUAaaGGCCcUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 4885 0.68 0.861837
Target:  5'- gGCCGUCggCCGGAGGgucggagCCGGG-CCa- -3'
miRNA:   3'- -UGGCAG--GGCCUUUaaa----GGCCCuGGcg -5'
29646 3' -55.4 NC_006151.1 + 5015 0.68 0.869298
Target:  5'- gGCCGggcgggCuCCGGGg----CCGGGGCCGg -3'
miRNA:   3'- -UGGCa-----G-GGCCUuuaaaGGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 5400 0.75 0.488883
Target:  5'- cGCCGUCCcCGGcgaggccGAGUccguccucguccUUCuCGGGGCCGCg -3'
miRNA:   3'- -UGGCAGG-GCC-------UUUA------------AAG-GCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 5842 0.67 0.894378
Target:  5'- gGCCGgggaggCUgCGGAGGgggacgagcgcCCGGGGCCGCc -3'
miRNA:   3'- -UGGCa-----GG-GCCUUUaaa--------GGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 5927 0.8 0.273068
Target:  5'- gGCCGgggCCCGGAGccggcCCGGGACCGg -3'
miRNA:   3'- -UGGCa--GGGCCUUuaaa-GGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 7712 0.7 0.739152
Target:  5'- cGCCGUCggaCCGGGGA---CCGGcGACCGg -3'
miRNA:   3'- -UGGCAG---GGCCUUUaaaGGCC-CUGGCg -5'
29646 3' -55.4 NC_006151.1 + 7741 0.66 0.94133
Target:  5'- cCCGaaCCGGGAAgcgacgCCGGGGCgGg -3'
miRNA:   3'- uGGCagGGCCUUUaaa---GGCCCUGgCg -5'
29646 3' -55.4 NC_006151.1 + 8187 0.69 0.830009
Target:  5'- gGCCGggacCCCGGggGcgcUCCGGGagacgaagaggGCCGg -3'
miRNA:   3'- -UGGCa---GGGCCuuUaa-AGGCCC-----------UGGCg -5'
29646 3' -55.4 NC_006151.1 + 8254 0.66 0.92104
Target:  5'- gGCCGgcgCgCCGGGAcgccccUCCGGGGgaaagaguguccCCGCg -3'
miRNA:   3'- -UGGCa--G-GGCCUUuaa---AGGCCCU------------GGCG- -5'
29646 3' -55.4 NC_006151.1 + 8308 0.66 0.92104
Target:  5'- -gCGUCCCGccccGAGccc-CCGGGGCgCGCg -3'
miRNA:   3'- ugGCAGGGC----CUUuaaaGGCCCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 8377 0.73 0.588302
Target:  5'- cCCGccCCCGGggGggUCCGGGAUgGg -3'
miRNA:   3'- uGGCa-GGGCCuuUaaAGGCCCUGgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.