miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 142277 0.72 0.662447
Target:  5'- cCCGUCCCGGcggccagaccggCCGGGACgagaGCg -3'
miRNA:   3'- uGGCAGGGCCuuuaaa------GGCCCUGg---CG- -5'
29646 3' -55.4 NC_006151.1 + 141784 0.68 0.854172
Target:  5'- uCUGUCCCGGGGAcgcgggUCGGucCCGCc -3'
miRNA:   3'- uGGCAGGGCCUUUaaa---GGCCcuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 141603 0.73 0.598422
Target:  5'- aGCCG-CCCGGcGAggcugCCGGGAUCGg -3'
miRNA:   3'- -UGGCaGGGCCuUUaaa--GGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 138612 0.67 0.909479
Target:  5'- uGCCG-CUCGGcGAggacgccgCCGGGGgCGCg -3'
miRNA:   3'- -UGGCaGGGCCuUUaaa-----GGCCCUgGCG- -5'
29646 3' -55.4 NC_006151.1 + 134121 0.72 0.639078
Target:  5'- -gUGUgCCGGAG---UCCGGGGCCGg -3'
miRNA:   3'- ugGCAgGGCCUUuaaAGGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 133009 0.72 0.639078
Target:  5'- uCCG-CCCGGggGUgcucucgUCCaGGACgGCg -3'
miRNA:   3'- uGGCaGGGCCuuUAa------AGGcCCUGgCG- -5'
29646 3' -55.4 NC_006151.1 + 132830 0.7 0.745916
Target:  5'- gGCCGcCCgCGGGAcggccaccacgggcGgccggcCCGGGGCCGCg -3'
miRNA:   3'- -UGGCaGG-GCCUU--------------Uaaa---GGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 132636 0.68 0.861837
Target:  5'- cGCCGUcggcgCCCGGA-----CCuGGGCCGCc -3'
miRNA:   3'- -UGGCA-----GGGCCUuuaaaGGcCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 131760 0.68 0.846307
Target:  5'- gACCGUCgCGGucgcgaCCGcGGCCGCg -3'
miRNA:   3'- -UGGCAGgGCCuuuaaaGGCcCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 131118 0.66 0.94133
Target:  5'- gGCCGcggCgCGGGAGg--CCGcGGcGCCGCg -3'
miRNA:   3'- -UGGCa--GgGCCUUUaaaGGC-CC-UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 130911 0.72 0.649248
Target:  5'- cGCCGUCgUCGGugg---CCGGGcCCGCg -3'
miRNA:   3'- -UGGCAG-GGCCuuuaaaGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 130853 0.68 0.86032
Target:  5'- cGCCGUCggCGGcgcggg-CGGGACCGCa -3'
miRNA:   3'- -UGGCAGg-GCCuuuaaagGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 130111 0.69 0.795341
Target:  5'- gGCCGUgaagCCCGGGuucuggCCGuGGGCgCGCg -3'
miRNA:   3'- -UGGCA----GGGCCUuuaaa-GGC-CCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 129683 0.71 0.699728
Target:  5'- cACCGU-CCGGccg---CCGuGGACCGCg -3'
miRNA:   3'- -UGGCAgGGCCuuuaaaGGC-CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 129526 0.75 0.480378
Target:  5'- uGCCG-CCgaCGGggGggcCCGGGGCCGCc -3'
miRNA:   3'- -UGGCaGG--GCCuuUaaaGGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 127372 0.71 0.719588
Target:  5'- gGCgGggaCCgCGGggGUggCgGGGGCCGCg -3'
miRNA:   3'- -UGgCa--GG-GCCuuUAaaGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 126063 0.66 0.936611
Target:  5'- gUgGUCCUGGGugccaCgGGGGCCGUg -3'
miRNA:   3'- uGgCAGGGCCUuuaaaGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 122876 0.66 0.926467
Target:  5'- uGCUGgaCCCGGA-----CCGGGccaACCGCg -3'
miRNA:   3'- -UGGCa-GGGCCUuuaaaGGCCC---UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 122431 0.66 0.936611
Target:  5'- cGCCGaggCCCGGGAGg---CGGaGGCgGCg -3'
miRNA:   3'- -UGGCa--GGGCCUUUaaagGCC-CUGgCG- -5'
29646 3' -55.4 NC_006151.1 + 117933 0.68 0.854172
Target:  5'- uCCG-CCCGGAGAg----GGGACCGa -3'
miRNA:   3'- uGGCaGGGCCUUUaaaggCCCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.