miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 3' -55.4 NC_006151.1 + 8970 0.7 0.786289
Target:  5'- cGCgCGcCCCGGGAAgggUCGGGcgaugGCCGCc -3'
miRNA:   3'- -UG-GCaGGGCCUUUaaaGGCCC-----UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 11212 0.74 0.518691
Target:  5'- gGCgCGUCCgGGAAGgcuucUCCcGGGCCGCg -3'
miRNA:   3'- -UG-GCAGGgCCUUUaa---AGGcCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 11518 0.68 0.869298
Target:  5'- cCCG-CCCGcGGcac-UCCGGGcCCGCg -3'
miRNA:   3'- uGGCaGGGC-CUuuaaAGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13000 0.74 0.568161
Target:  5'- cCCGUCCCGGggGaUUCCcugucccucGGGG-CGCg -3'
miRNA:   3'- uGGCAGGGCCuuUaAAGG---------CCCUgGCG- -5'
29646 3' -55.4 NC_006151.1 + 13154 0.93 0.039271
Target:  5'- uGCgGUCCCGGAAAUUUCCGGGacggucGCCGCg -3'
miRNA:   3'- -UGgCAGGGCCUUUAAAGGCCC------UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13187 0.71 0.699728
Target:  5'- gGCCGUCUCGGGGc---CCGcGGcGCCGCc -3'
miRNA:   3'- -UGGCAGGGCCUUuaaaGGC-CC-UGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13405 0.69 0.795341
Target:  5'- cGCCGgCCaaugGGGGAg--CCGGGcCCGCg -3'
miRNA:   3'- -UGGCaGGg---CCUUUaaaGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13451 0.71 0.699728
Target:  5'- gGCCgGUCCCGGAcgcccgUCCcgcgggccGGACCGCc -3'
miRNA:   3'- -UGG-CAGGGCCUuuaa--AGGc-------CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13732 0.71 0.699728
Target:  5'- gGCCgGUCCCGGAcgcccgUCCcgcgggccGGACCGCc -3'
miRNA:   3'- -UGG-CAGGGCCUuuaa--AGGc-------CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 13965 0.7 0.758347
Target:  5'- cGCCGgCCaugGGGGAg--CCGGGcCCGCg -3'
miRNA:   3'- -UGGCaGGg--CCUUUaaaGGCCCuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 14369 0.68 0.846307
Target:  5'- cAUCGUUCCGGAAGaaacgccUCgGGGGUCGCg -3'
miRNA:   3'- -UGGCAGGGCCUUUaa-----AGgCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 14647 0.7 0.7488
Target:  5'- gGCCGggCUCGGGuccggUUCCGGGuCgGCg -3'
miRNA:   3'- -UGGCa-GGGCCUuua--AAGGCCCuGgCG- -5'
29646 3' -55.4 NC_006151.1 + 16859 0.73 0.598422
Target:  5'- uGCCGUCuaGGAGAUgguacaUCgCGGGGCgCGCu -3'
miRNA:   3'- -UGGCAGggCCUUUAa-----AG-GCCCUG-GCG- -5'
29646 3' -55.4 NC_006151.1 + 17712 0.67 0.896987
Target:  5'- uGCUGUgugcgCCCGGGugcg-CCGGGGCC-Ca -3'
miRNA:   3'- -UGGCA-----GGGCCUuuaaaGGCCCUGGcG- -5'
29646 3' -55.4 NC_006151.1 + 18657 0.66 0.915377
Target:  5'- aGCCG-CCCGGgcGUcgUCCGG--CCGUa -3'
miRNA:   3'- -UGGCaGGGCCuuUAa-AGGCCcuGGCG- -5'
29646 3' -55.4 NC_006151.1 + 18771 0.73 0.578212
Target:  5'- cCCGgggCCCGGG-----CCGGGGCCGUc -3'
miRNA:   3'- uGGCa--GGGCCUuuaaaGGCCCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 20172 0.67 0.883583
Target:  5'- gGCCGcgCCCGGGucgcggccgguaGAUgcgaUUCCGcgcgcagcgccGGGCCGCg -3'
miRNA:   3'- -UGGCa-GGGCCU------------UUA----AAGGC-----------CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 21515 0.68 0.846307
Target:  5'- cACCGgggcgggCUCGGGcuucggCCGGGGCCGg -3'
miRNA:   3'- -UGGCa------GGGCCUuuaaa-GGCCCUGGCg -5'
29646 3' -55.4 NC_006151.1 + 21549 0.69 0.794443
Target:  5'- gGCCGgggCCUGGGccucggcGAgcccgCCGaGGGCCGCg -3'
miRNA:   3'- -UGGCa--GGGCCU-------UUaaa--GGC-CCUGGCG- -5'
29646 3' -55.4 NC_006151.1 + 21668 0.67 0.890397
Target:  5'- cACC-UCCCGGug----CgGGGGCUGCu -3'
miRNA:   3'- -UGGcAGGGCCuuuaaaGgCCCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.