miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 66867 0.67 0.772972
Target:  5'- cGGGgcGgCGCGaaGGGCGCGCccGGCCc -3'
miRNA:   3'- -CCCuuCaGCGCc-CUCGCGCGcaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 102609 0.67 0.76384
Target:  5'- cGGGcgcucgaGCGGGcGCGCGaCGUGAgCg -3'
miRNA:   3'- -CCCuucag--CGCCCuCGCGC-GCACUgG- -5'
29646 5' -58.9 NC_006151.1 + 91564 0.67 0.76384
Target:  5'- cGGGgcGaUgGCGGc-GCGCGCGUGcuCCa -3'
miRNA:   3'- -CCCuuC-AgCGCCcuCGCGCGCACu-GG- -5'
29646 5' -58.9 NC_006151.1 + 128631 0.67 0.754597
Target:  5'- --cAGGUgGCGGaccacGCGCGCGUcGACCg -3'
miRNA:   3'- cccUUCAgCGCCcu---CGCGCGCA-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 21580 0.67 0.754597
Target:  5'- aGGGccG-CGCGGGgucgauGGCGUacgGCGUGGCg -3'
miRNA:   3'- -CCCuuCaGCGCCC------UCGCG---CGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 92566 0.67 0.754597
Target:  5'- uGGccGAGUCGCuGGAGgGCcGCGaggUGGCCc -3'
miRNA:   3'- cCC--UUCAGCGcCCUCgCG-CGC---ACUGG- -5'
29646 5' -58.9 NC_006151.1 + 100424 0.67 0.754597
Target:  5'- ------aCGCGGGGGCGCugcgcgGCGUGAUg -3'
miRNA:   3'- cccuucaGCGCCCUCGCG------CGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 121666 0.67 0.754597
Target:  5'- gGGcGGAGg-GgGGGAGCGaGCG-GGCCg -3'
miRNA:   3'- -CC-CUUCagCgCCCUCGCgCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 131108 0.67 0.754597
Target:  5'- cGGGggGcccggccgcggCGCGGGAGgcCGCgGCGccgcGGCCg -3'
miRNA:   3'- -CCCuuCa----------GCGCCCUC--GCG-CGCa---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 8548 0.67 0.754597
Target:  5'- uGGGggGUgUGCGagagaGAGCGUGCGUGu-- -3'
miRNA:   3'- -CCCuuCA-GCGCc----CUCGCGCGCACugg -5'
29646 5' -58.9 NC_006151.1 + 45041 0.67 0.754597
Target:  5'- gGGGAAG-CGUGGGGG-GUGUGggggGAUg -3'
miRNA:   3'- -CCCUUCaGCGCCCUCgCGCGCa---CUGg -5'
29646 5' -58.9 NC_006151.1 + 120209 0.67 0.754597
Target:  5'- aGGGcAG-CGC-GGAGCccccgGCGCGcGACCa -3'
miRNA:   3'- -CCCuUCaGCGcCCUCG-----CGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 111121 0.67 0.746192
Target:  5'- cGGGGAG-CGCGcGucugugcgcgcccccGCGCGCGcGGCCg -3'
miRNA:   3'- -CCCUUCaGCGCcCu--------------CGCGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 73361 0.67 0.744314
Target:  5'- cGGcAGGUUGCccauguccgucacGGGGGCGCGCagcgcGGCCg -3'
miRNA:   3'- cCC-UUCAGCG-------------CCCUCGCGCGca---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 55446 0.67 0.742432
Target:  5'- cGGGAccGG-CGCcgccggccccgccgGGGGGCGCGCGcccgGcGCCg -3'
miRNA:   3'- -CCCU--UCaGCG--------------CCCUCGCGCGCa---C-UGG- -5'
29646 5' -58.9 NC_006151.1 + 104902 0.67 0.735817
Target:  5'- uGGuGGaCGCGGcGGCgGCGCGcGACCg -3'
miRNA:   3'- cCCuUCaGCGCCcUCG-CGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 19118 0.67 0.735817
Target:  5'- aGGcac-CGCGGGGGCGCGCGcGcguaguACCa -3'
miRNA:   3'- cCCuucaGCGCCCUCGCGCGCaC------UGG- -5'
29646 5' -58.9 NC_006151.1 + 130713 0.67 0.735817
Target:  5'- cGGGgcGgCcCGGGGGCcCGCGcGGCCg -3'
miRNA:   3'- -CCCuuCaGcGCCCUCGcGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 102394 0.67 0.735817
Target:  5'- uGGcgcuGGUCGCGGcGcGCGuCGCGcGGCCc -3'
miRNA:   3'- cCCu---UCAGCGCC-CuCGC-GCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 63500 0.67 0.735817
Target:  5'- -aGAAGguggccagGUGGGGGCGCGCGgGGCg -3'
miRNA:   3'- ccCUUCag------CGCCCUCGCGCGCaCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.