miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 127472 0.66 0.799629
Target:  5'- uGGGcGG-CGCGGaacGAGC-CGCG-GACCc -3'
miRNA:   3'- -CCCuUCaGCGCC---CUCGcGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 57336 0.66 0.794393
Target:  5'- cGGGAagccgacaaAGUcCGCGGGGcccucGCGCcgccgcagccaguagGCGUGGCa -3'
miRNA:   3'- -CCCU---------UCA-GCGCCCU-----CGCG---------------CGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 141632 0.66 0.790875
Target:  5'- cGGGucgcuGcCGCGGcGGCGCgGCGgGGCCc -3'
miRNA:   3'- -CCCuu---CaGCGCCcUCGCG-CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 115686 0.66 0.790875
Target:  5'- cGGGGAGgcaG-GGGAGCaGCcCGuUGGCCa -3'
miRNA:   3'- -CCCUUCag-CgCCCUCG-CGcGC-ACUGG- -5'
29646 5' -58.9 NC_006151.1 + 121554 0.66 0.790875
Target:  5'- gGGGAGGagGaGGGgaaggggacgGGCGCGgGUGcCCg -3'
miRNA:   3'- -CCCUUCagCgCCC----------UCGCGCgCACuGG- -5'
29646 5' -58.9 NC_006151.1 + 78702 0.66 0.789992
Target:  5'- cGGGGccucGUCGCcgcgacggcgcccGuGGGGCGCGCGcugcGGCCc -3'
miRNA:   3'- -CCCUu---CAGCG-------------C-CCUCGCGCGCa---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 36497 0.66 0.789992
Target:  5'- gGGGAcccGGUCGgugagccCGGGccGGCgGCGCGgccucgGACCc -3'
miRNA:   3'- -CCCU---UCAGC-------GCCC--UCG-CGCGCa-----CUGG- -5'
29646 5' -58.9 NC_006151.1 + 127413 0.66 0.788222
Target:  5'- cGGGAGccCGCGGGGucgccucggcgcucGUGCGCGaGAgCCg -3'
miRNA:   3'- -CCCUUcaGCGCCCU--------------CGCGCGCaCU-GG- -5'
29646 5' -58.9 NC_006151.1 + 75862 0.67 0.785558
Target:  5'- cGGGgcGccccugcguguccgCGUGGGucauGCGCGCGacGGCCa -3'
miRNA:   3'- -CCCuuCa-------------GCGCCCu---CGCGCGCa-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 8242 0.67 0.781987
Target:  5'- cGGGGAGggcCGGGccGGCGCGCcggGACg -3'
miRNA:   3'- -CCCUUCagcGCCC--UCGCGCGca-CUGg -5'
29646 5' -58.9 NC_006151.1 + 1808 0.67 0.781987
Target:  5'- cGGGGAGgcaggCGCcgGGGAGgcaaGCGCcgccgGGCCg -3'
miRNA:   3'- -CCCUUCa----GCG--CCCUCg---CGCGca---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 28553 0.67 0.781987
Target:  5'- gGGGGAGcCGUgcccgcgucccGGGAGCcCGCauUGGCCg -3'
miRNA:   3'- -CCCUUCaGCG-----------CCCUCGcGCGc-ACUGG- -5'
29646 5' -58.9 NC_006151.1 + 84642 0.67 0.781987
Target:  5'- uGGAcaacgccauGGcCGCGGGcGCGCGCcucgaGGCCg -3'
miRNA:   3'- cCCU---------UCaGCGCCCuCGCGCGca---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 138230 0.67 0.781987
Target:  5'- cGGGcgcgcgcacGAGUaCGCGGGcgcgaccgcgcAGCGgGUgGUGGCCa -3'
miRNA:   3'- -CCC---------UUCA-GCGCCC-----------UCGCgCG-CACUGG- -5'
29646 5' -58.9 NC_006151.1 + 28791 0.67 0.781987
Target:  5'- gGGGcGGUccggccCGCGGGA-CGgGCGUccggGACCg -3'
miRNA:   3'- -CCCuUCA------GCGCCCUcGCgCGCA----CUGG- -5'
29646 5' -58.9 NC_006151.1 + 65716 0.67 0.772972
Target:  5'- aGGggGccUCGCGcGGcuGCGCGCG-GcCCa -3'
miRNA:   3'- cCCuuC--AGCGC-CCu-CGCGCGCaCuGG- -5'
29646 5' -58.9 NC_006151.1 + 34645 0.67 0.772972
Target:  5'- cGGggGUCGCGGGAGgGUcuCGggGGUCu -3'
miRNA:   3'- cCCuuCAGCGCCCUCgCGc-GCa-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 21499 0.67 0.772972
Target:  5'- cGGGggG-CGCGGGcgucaccggGGCGgGCucgGGCUu -3'
miRNA:   3'- -CCCuuCaGCGCCC---------UCGCgCGca-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 129986 0.67 0.772972
Target:  5'- cGGAAggccucGUCGuCGGGgauguccgagacGGCGCGCGccacGGCCg -3'
miRNA:   3'- cCCUU------CAGC-GCCC------------UCGCGCGCa---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 88293 0.67 0.772972
Target:  5'- cGGGuGGUagaCGUGGGGGCGCag--GGCCu -3'
miRNA:   3'- -CCCuUCA---GCGCCCUCGCGcgcaCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.