Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29646 | 5' | -58.9 | NC_006151.1 | + | 142557 | 0.66 | 0.825006 |
Target: 5'- aGGggGUUGgGGGgaaGGCGCGCucu-CCu -3' miRNA: 3'- cCCuuCAGCgCCC---UCGCGCGcacuGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 29286 | 0.66 | 0.825006 |
Target: 5'- cGGGAGGgugggGUGGGAGCGgagaaagugaGUGUGGgCg -3' miRNA: 3'- -CCCUUCag---CGCCCUCGCg---------CGCACUgG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 17253 | 0.66 | 0.824183 |
Target: 5'- aGGAccacuccguguccAGcCGCGGGGGCGgGC-UGAUa -3' miRNA: 3'- cCCU-------------UCaGCGCCCUCGCgCGcACUGg -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 8050 | 0.66 | 0.820043 |
Target: 5'- aGGGAGUUGgGGGgaggggagccaagauGGCGacgggGCGUGGCg -3' miRNA: 3'- cCCUUCAGCgCCC---------------UCGCg----CGCACUGg -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 131733 | 0.66 | 0.816702 |
Target: 5'- aGGcGggGUgGCGGGccCGgGCGaggcGACCg -3' miRNA: 3'- -CC-CuuCAgCGCCCucGCgCGCa---CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 127922 | 0.66 | 0.816702 |
Target: 5'- cGGGGA---GCGGGGGCG-GCGaGACg -3' miRNA: 3'- -CCCUUcagCGCCCUCGCgCGCaCUGg -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 96729 | 0.66 | 0.816702 |
Target: 5'- -cGAGGagGCGGcGGGCGCGaCGacggaGGCCa -3' miRNA: 3'- ccCUUCagCGCC-CUCGCGC-GCa----CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 84426 | 0.66 | 0.816702 |
Target: 5'- aGGcGGcgCGCGGcGGCGCGCG-GcCCa -3' miRNA: 3'- cCCuUCa-GCGCCcUCGCGCGCaCuGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 66867 | 0.67 | 0.772972 |
Target: 5'- cGGGgcGgCGCGaaGGGCGCGCccGGCCc -3' miRNA: 3'- -CCCuuCaGCGCc-CUCGCGCGcaCUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 34645 | 0.67 | 0.772972 |
Target: 5'- cGGggGUCGCGGGAGgGUcuCGggGGUCu -3' miRNA: 3'- cCCuuCAGCGCCCUCgCGc-GCa-CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 21499 | 0.67 | 0.772972 |
Target: 5'- cGGGggG-CGCGGGcgucaccggGGCGgGCucgGGCUu -3' miRNA: 3'- -CCCuuCaGCGCCC---------UCGCgCGca-CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 129986 | 0.67 | 0.772972 |
Target: 5'- cGGAAggccucGUCGuCGGGgauguccgagacGGCGCGCGccacGGCCg -3' miRNA: 3'- cCCUU------CAGC-GCCC------------UCGCGCGCa---CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 88293 | 0.67 | 0.772972 |
Target: 5'- cGGGuGGUagaCGUGGGGGCGCag--GGCCu -3' miRNA: 3'- -CCCuUCA---GCGCCCUCGCGcgcaCUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 8242 | 0.67 | 0.781987 |
Target: 5'- cGGGGAGggcCGGGccGGCGCGCcggGACg -3' miRNA: 3'- -CCCUUCagcGCCC--UCGCGCGca-CUGg -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 1808 | 0.67 | 0.781987 |
Target: 5'- cGGGGAGgcaggCGCcgGGGAGgcaaGCGCcgccgGGCCg -3' miRNA: 3'- -CCCUUCa----GCG--CCCUCg---CGCGca---CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 28553 | 0.67 | 0.781987 |
Target: 5'- gGGGGAGcCGUgcccgcgucccGGGAGCcCGCauUGGCCg -3' miRNA: 3'- -CCCUUCaGCG-----------CCCUCGcGCGc-ACUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 84642 | 0.67 | 0.781987 |
Target: 5'- uGGAcaacgccauGGcCGCGGGcGCGCGCcucgaGGCCg -3' miRNA: 3'- cCCU---------UCaGCGCCCuCGCGCGca---CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 138230 | 0.67 | 0.781987 |
Target: 5'- cGGGcgcgcgcacGAGUaCGCGGGcgcgaccgcgcAGCGgGUgGUGGCCa -3' miRNA: 3'- -CCC---------UUCA-GCGCCC-----------UCGCgCG-CACUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 28791 | 0.67 | 0.781987 |
Target: 5'- gGGGcGGUccggccCGCGGGA-CGgGCGUccggGACCg -3' miRNA: 3'- -CCCuUCA------GCGCCCUcGCgCGCA----CUGG- -5' |
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29646 | 5' | -58.9 | NC_006151.1 | + | 65716 | 0.67 | 0.772972 |
Target: 5'- aGGggGccUCGCGcGGcuGCGCGCG-GcCCa -3' miRNA: 3'- cCCuuC--AGCGC-CCu-CGCGCGCaCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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