miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 14124 0.72 0.483348
Target:  5'- cGGGAGagGCGcGGAGCGCGCcccgaGCCg -3'
miRNA:   3'- cCCUUCagCGC-CCUCGCGCGcac--UGG- -5'
29646 5' -58.9 NC_006151.1 + 14254 0.75 0.341371
Target:  5'- gGGGAucccccGGUCGgggugggcCGGGAGUGgGCGUGGCa -3'
miRNA:   3'- -CCCU------UCAGC--------GCCCUCGCgCGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 14464 0.66 0.825006
Target:  5'- cGGGuuGGGUUggGCGGGuGgGCGgGUGGgCg -3'
miRNA:   3'- -CCC--UUCAG--CGCCCuCgCGCgCACUgG- -5'
29646 5' -58.9 NC_006151.1 + 15033 0.7 0.559277
Target:  5'- aGGAGGUgCGCGuccacGGCGCGCGgGGCCc -3'
miRNA:   3'- cCCUUCA-GCGCcc---UCGCGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 15874 0.68 0.707032
Target:  5'- cGGGAAGgacgccgccCGcCGGGGGaCGCGCGccccGACg -3'
miRNA:   3'- -CCCUUCa--------GC-GCCCUC-GCGCGCa---CUGg -5'
29646 5' -58.9 NC_006151.1 + 16989 0.68 0.681644
Target:  5'- aGGAgcGGUUGUGGacccgcgcgaacauGGCGCGgGUGGCCg -3'
miRNA:   3'- cCCU--UCAGCGCCc-------------UCGCGCgCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 17253 0.66 0.824183
Target:  5'- aGGAccacuccguguccAGcCGCGGGGGCGgGC-UGAUa -3'
miRNA:   3'- cCCU-------------UCaGCGCCCUCGCgCGcACUGg -5'
29646 5' -58.9 NC_006151.1 + 19118 0.67 0.735817
Target:  5'- aGGcac-CGCGGGGGCGCGCGcGcguaguACCa -3'
miRNA:   3'- cCCuucaGCGCCCUCGCGCGCaC------UGG- -5'
29646 5' -58.9 NC_006151.1 + 19262 0.69 0.657975
Target:  5'- uGGAAG-CG-GGGcucguGGCGCGCGgGGCCc -3'
miRNA:   3'- cCCUUCaGCgCCC-----UCGCGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 20133 0.83 0.108176
Target:  5'- uGGGggGcgggcgcCGCGGGGGCgGCGCGUGgACCg -3'
miRNA:   3'- -CCCuuCa------GCGCCCUCG-CGCGCAC-UGG- -5'
29646 5' -58.9 NC_006151.1 + 20480 0.7 0.578835
Target:  5'- cGGGggGgCGCGGGGGuCGUcgGCGgcucUGGCUc -3'
miRNA:   3'- -CCCuuCaGCGCCCUC-GCG--CGC----ACUGG- -5'
29646 5' -58.9 NC_006151.1 + 20622 0.68 0.725339
Target:  5'- -uGggGUgGUGGGGGCGCccccuggGCGgcaccagGGCCg -3'
miRNA:   3'- ccCuuCAgCGCCCUCGCG-------CGCa------CUGG- -5'
29646 5' -58.9 NC_006151.1 + 21434 0.69 0.627252
Target:  5'- cGGggGUCGCGGcGugggguggcccccGGCG-GCGUGGuCCc -3'
miRNA:   3'- cCCuuCAGCGCC-C-------------UCGCgCGCACU-GG- -5'
29646 5' -58.9 NC_006151.1 + 21499 0.67 0.772972
Target:  5'- cGGGggG-CGCGGGcgucaccggGGCGgGCucgGGCUu -3'
miRNA:   3'- -CCCuuCaGCGCCC---------UCGCgCGca-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 21580 0.67 0.754597
Target:  5'- aGGGccG-CGCGGGgucgauGGCGUacgGCGUGGCg -3'
miRNA:   3'- -CCCuuCaGCGCCC------UCGCG---CGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 22279 0.68 0.691447
Target:  5'- gGGGAAGgucggCGCGGGcacGGCGUccacguccgcgccgaGCGUcguccgggcGACCa -3'
miRNA:   3'- -CCCUUCa----GCGCCC---UCGCG---------------CGCA---------CUGG- -5'
29646 5' -58.9 NC_006151.1 + 22513 0.76 0.305757
Target:  5'- gGGGggGaaUCGCGGGGGaguCGgGCGgGGCCg -3'
miRNA:   3'- -CCCuuC--AGCGCCCUC---GCgCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 22828 0.66 0.816702
Target:  5'- aGGggG-CGCgaGGcGAGCGCGC-UGcCCa -3'
miRNA:   3'- cCCuuCaGCG--CC-CUCGCGCGcACuGG- -5'
29646 5' -58.9 NC_006151.1 + 26303 0.69 0.657975
Target:  5'- gGGGggGUgGgGGGAGgaaagaacaGCGCGgggcgaGGCCc -3'
miRNA:   3'- -CCCuuCAgCgCCCUCg--------CGCGCa-----CUGG- -5'
29646 5' -58.9 NC_006151.1 + 26350 0.68 0.707032
Target:  5'- cGGGGcggcggcgGGcCGCGucGGGGCGCGCGUcccCCg -3'
miRNA:   3'- -CCCU--------UCaGCGC--CCUCGCGCGCAcu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.