miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 1808 0.67 0.781987
Target:  5'- cGGGGAGgcaggCGCcgGGGAGgcaaGCGCcgccgGGCCg -3'
miRNA:   3'- -CCCUUCa----GCG--CCCUCg---CGCGca---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 2617 0.7 0.598535
Target:  5'- cGGGAccggGGUC-CGGGgcccGGCGCGgGUGcucACCg -3'
miRNA:   3'- -CCCU----UCAGcGCCC----UCGCGCgCAC---UGG- -5'
29646 5' -58.9 NC_006151.1 + 3524 0.69 0.628243
Target:  5'- aGGAGGacagcagCGCGGGAGCGggguccggaGCG-GGCCc -3'
miRNA:   3'- cCCUUCa------GCGCCCUCGCg--------CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 3858 0.69 0.648074
Target:  5'- gGGGAGGcCGgaGGGGGCGCcCGccGCCg -3'
miRNA:   3'- -CCCUUCaGCg-CCCUCGCGcGCacUGG- -5'
29646 5' -58.9 NC_006151.1 + 4154 0.72 0.474192
Target:  5'- gGGGAucgcGUCGC-GGAGCGCgagcaGCGcGGCCg -3'
miRNA:   3'- -CCCUu---CAGCGcCCUCGCG-----CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 4600 0.7 0.608424
Target:  5'- aGGAgccguGGcCGUGGG-GCGCGUG-GACCc -3'
miRNA:   3'- cCCU-----UCaGCGCCCuCGCGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 5376 0.7 0.568058
Target:  5'- gGGGcuGUCucuGCGGGGGCGCcccgccguccccgGCGaGGCCg -3'
miRNA:   3'- -CCCuuCAG---CGCCCUCGCG-------------CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 5846 0.69 0.667857
Target:  5'- gGGGAGGcUGCGGagggggacGAGCGCcCGgGGCCg -3'
miRNA:   3'- -CCCUUCaGCGCC--------CUCGCGcGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 8002 0.68 0.726295
Target:  5'- cGGGcGG--GCGGGAGgggGCGCGaGACCg -3'
miRNA:   3'- -CCCuUCagCGCCCUCg--CGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 8050 0.66 0.820043
Target:  5'- aGGGAGUUGgGGGgaggggagccaagauGGCGacgggGCGUGGCg -3'
miRNA:   3'- cCCUUCAGCgCCC---------------UCGCg----CGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 8107 0.7 0.569036
Target:  5'- gGGGGAGg-GgGGGGGUcggaGCGCG-GACCc -3'
miRNA:   3'- -CCCUUCagCgCCCUCG----CGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 8242 0.67 0.781987
Target:  5'- cGGGGAGggcCGGGccGGCGCGCcggGACg -3'
miRNA:   3'- -CCCUUCagcGCCC--UCGCGCGca-CUGg -5'
29646 5' -58.9 NC_006151.1 + 8548 0.67 0.754597
Target:  5'- uGGGggGUgUGCGagagaGAGCGUGCGUGu-- -3'
miRNA:   3'- -CCCuuCA-GCGCc----CUCGCGCGCACugg -5'
29646 5' -58.9 NC_006151.1 + 9632 0.68 0.677712
Target:  5'- aGGGggGaaGCGGGAGggagagGCGCGgcGCCc -3'
miRNA:   3'- -CCCuuCagCGCCCUCg-----CGCGCacUGG- -5'
29646 5' -58.9 NC_006151.1 + 10403 0.69 0.618329
Target:  5'- gGGGggGgagaGCGGGGuGaCGcCGCGggugGGCCg -3'
miRNA:   3'- -CCCuuCag--CGCCCU-C-GC-GCGCa---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 10670 0.76 0.305757
Target:  5'- gGGGGAG-CGC-GGAGCGCGCcgcccccccGUGAUCa -3'
miRNA:   3'- -CCCUUCaGCGcCCUCGCGCG---------CACUGG- -5'
29646 5' -58.9 NC_006151.1 + 10918 0.69 0.638161
Target:  5'- cGGGGucGGgcccacggCGCcgagGGuGGGCGCGCGUGuCCg -3'
miRNA:   3'- -CCCU--UCa-------GCG----CC-CUCGCGCGCACuGG- -5'
29646 5' -58.9 NC_006151.1 + 11693 0.69 0.618329
Target:  5'- -cGggGcCGCGGGAcgGCGCGUGcGGCg -3'
miRNA:   3'- ccCuuCaGCGCCCU--CGCGCGCaCUGg -5'
29646 5' -58.9 NC_006151.1 + 11747 0.69 0.667857
Target:  5'- gGGGGAGgggUGCGGGcgagugAGCGUGCGcGAa- -3'
miRNA:   3'- -CCCUUCa--GCGCCC------UCGCGCGCaCUgg -5'
29646 5' -58.9 NC_006151.1 + 13102 0.7 0.578835
Target:  5'- aGGGAgaGGUCGCGGcGGGUcacGCGCGcucCCg -3'
miRNA:   3'- -CCCU--UCAGCGCC-CUCG---CGCGCacuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.