miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 142557 0.66 0.825006
Target:  5'- aGGggGUUGgGGGgaaGGCGCGCucu-CCu -3'
miRNA:   3'- cCCuuCAGCgCCC---UCGCGCGcacuGG- -5'
29646 5' -58.9 NC_006151.1 + 141995 0.68 0.697307
Target:  5'- cGGGAAaaagagCGCGgcguGGGGCGgGUGUGGCa -3'
miRNA:   3'- -CCCUUca----GCGC----CCUCGCgCGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 141744 0.76 0.285791
Target:  5'- cGGAGGggCGCGGGGcGCGCGCcccgGUGGCg -3'
miRNA:   3'- cCCUUCa-GCGCCCU-CGCGCG----CACUGg -5'
29646 5' -58.9 NC_006151.1 + 141632 0.66 0.790875
Target:  5'- cGGGucgcuGcCGCGGcGGCGCgGCGgGGCCc -3'
miRNA:   3'- -CCCuu---CaGCGCCcUCGCG-CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 139651 0.79 0.196399
Target:  5'- cGGggGUCGCGGcGGGCGCGCc--GCCc -3'
miRNA:   3'- cCCuuCAGCGCC-CUCGCGCGcacUGG- -5'
29646 5' -58.9 NC_006151.1 + 139080 0.66 0.799629
Target:  5'- cGGGcuc-CGCcuGGGGGCGCGCaUGGCg -3'
miRNA:   3'- -CCCuucaGCG--CCCUCGCGCGcACUGg -5'
29646 5' -58.9 NC_006151.1 + 138624 0.69 0.628243
Target:  5'- aGGAcGcCGcCGGGGGCGCGcCG-GACUg -3'
miRNA:   3'- cCCUuCaGC-GCCCUCGCGC-GCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 138230 0.67 0.781987
Target:  5'- cGGGcgcgcgcacGAGUaCGCGGGcgcgaccgcgcAGCGgGUgGUGGCCa -3'
miRNA:   3'- -CCC---------UUCA-GCGCCC-----------UCGCgCG-CACUGG- -5'
29646 5' -58.9 NC_006151.1 + 137758 0.66 0.833146
Target:  5'- ---cGGUcCGCGGccuGGCGCGCGUGcuCCa -3'
miRNA:   3'- cccuUCA-GCGCCc--UCGCGCGCACu-GG- -5'
29646 5' -58.9 NC_006151.1 + 137598 0.71 0.501908
Target:  5'- -cGggGUCGggauCGGGGGCGCGgGcgggGACCc -3'
miRNA:   3'- ccCuuCAGC----GCCCUCGCGCgCa---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 137112 0.69 0.628243
Target:  5'- cGGGGA--CGCcuGGGGGCGCGCGacGGCg -3'
miRNA:   3'- -CCCUUcaGCG--CCCUCGCGCGCa-CUGg -5'
29646 5' -58.9 NC_006151.1 + 136650 0.75 0.319651
Target:  5'- uGGGgcGcUCGCcccucgGGGAGCGCGCGgccGCCg -3'
miRNA:   3'- -CCCuuC-AGCG------CCCUCGCGCGCac-UGG- -5'
29646 5' -58.9 NC_006151.1 + 135104 0.68 0.716698
Target:  5'- cGGGcGGgcgGCGGuAGCGCGCGgggcgGGCUg -3'
miRNA:   3'- -CCCuUCag-CGCCcUCGCGCGCa----CUGG- -5'
29646 5' -58.9 NC_006151.1 + 135010 0.73 0.429792
Target:  5'- cGGggG-CGCGGGGGgGCagcaGCGgGGCCg -3'
miRNA:   3'- cCCuuCaGCGCCCUCgCG----CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 134738 0.66 0.80824
Target:  5'- cGGGAcuuuGUCGCcccGaGcAGCGCGCGcggGGCCc -3'
miRNA:   3'- -CCCUu---CAGCGc--C-C-UCGCGCGCa--CUGG- -5'
29646 5' -58.9 NC_006151.1 + 133996 0.69 0.664895
Target:  5'- uGGAAGagagCGCGGGGGCcaccagcgcgcagaGCGCGgcGACg -3'
miRNA:   3'- cCCUUCa---GCGCCCUCG--------------CGCGCa-CUGg -5'
29646 5' -58.9 NC_006151.1 + 133624 0.68 0.707032
Target:  5'- uGGggGUCGCGGcGGCcgggGCG-GUGGuCCg -3'
miRNA:   3'- cCCuuCAGCGCCcUCG----CGCgCACU-GG- -5'
29646 5' -58.9 NC_006151.1 + 133509 0.72 0.465124
Target:  5'- cGGGggG-CGCGGGAGgaGC-CGUaGCCa -3'
miRNA:   3'- -CCCuuCaGCGCCCUCg-CGcGCAcUGG- -5'
29646 5' -58.9 NC_006151.1 + 131733 0.66 0.816702
Target:  5'- aGGcGggGUgGCGGGccCGgGCGaggcGACCg -3'
miRNA:   3'- -CC-CuuCAgCGCCCucGCgCGCa---CUGG- -5'
29646 5' -58.9 NC_006151.1 + 131108 0.67 0.754597
Target:  5'- cGGGggGcccggccgcggCGCGGGAGgcCGCgGCGccgcGGCCg -3'
miRNA:   3'- -CCCuuCa----------GCGCCCUC--GCG-CGCa---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.