miRNA display CGI


Results 1 - 20 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 29135 1.13 0.001022
Target:  5'- cGGGAAGUCGCGGGAGCGCGCGUGACCc -3'
miRNA:   3'- -CCCUUCAGCGCCCUCGCGCGCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 130950 0.84 0.095206
Target:  5'- cGGGggGUCGCGcGGGCGCGgG-GGCCg -3'
miRNA:   3'- -CCCuuCAGCGCcCUCGCGCgCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 20133 0.83 0.108176
Target:  5'- uGGGggGcgggcgcCGCGGGGGCgGCGCGUGgACCg -3'
miRNA:   3'- -CCCuuCa------GCGCCCUCG-CGCGCAC-UGG- -5'
29646 5' -58.9 NC_006151.1 + 139651 0.79 0.196399
Target:  5'- cGGggGUCGCGGcGGGCGCGCc--GCCc -3'
miRNA:   3'- cCCuuCAGCGCC-CUCGCGCGcacUGG- -5'
29646 5' -58.9 NC_006151.1 + 115581 0.79 0.201186
Target:  5'- cGGGcAGGUCGCGcucGAGCagcucGCGCGUGGCCc -3'
miRNA:   3'- -CCC-UUCAGCGCc--CUCG-----CGCGCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 96994 0.77 0.260789
Target:  5'- cGGAGGgucaGCGGGGggacacGCGCGCGUGugCc -3'
miRNA:   3'- cCCUUCag--CGCCCU------CGCGCGCACugG- -5'
29646 5' -58.9 NC_006151.1 + 141744 0.76 0.285791
Target:  5'- cGGAGGggCGCGGGGcGCGCGCcccgGUGGCg -3'
miRNA:   3'- cCCUUCa-GCGCCCU-CGCGCG----CACUGg -5'
29646 5' -58.9 NC_006151.1 + 31422 0.76 0.298985
Target:  5'- gGGGAAGggGgGGGAcggggugcGCGCGCGUGugUg -3'
miRNA:   3'- -CCCUUCagCgCCCU--------CGCGCGCACugG- -5'
29646 5' -58.9 NC_006151.1 + 121421 0.76 0.298985
Target:  5'- cGGGGAcGUCGCGGG-GCuCGCGccGGCCu -3'
miRNA:   3'- -CCCUU-CAGCGCCCuCGcGCGCa-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 22513 0.76 0.305757
Target:  5'- gGGGggGaaUCGCGGGGGaguCGgGCGgGGCCg -3'
miRNA:   3'- -CCCuuC--AGCGCCCUC---GCgCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 10670 0.76 0.305757
Target:  5'- gGGGGAG-CGC-GGAGCGCGCcgcccccccGUGAUCa -3'
miRNA:   3'- -CCCUUCaGCGcCCUCGCGCG---------CACUGG- -5'
29646 5' -58.9 NC_006151.1 + 136650 0.75 0.319651
Target:  5'- uGGGgcGcUCGCcccucgGGGAGCGCGCGgccGCCg -3'
miRNA:   3'- -CCCuuC-AGCG------CCCUCGCGCGCac-UGG- -5'
29646 5' -58.9 NC_006151.1 + 73053 0.75 0.334014
Target:  5'- uGGggGUgCGCGGG-GUcCGCGUGGCUg -3'
miRNA:   3'- cCCuuCA-GCGCCCuCGcGCGCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 14254 0.75 0.341371
Target:  5'- gGGGAucccccGGUCGgggugggcCGGGAGUGgGCGUGGCa -3'
miRNA:   3'- -CCCU------UCAGC--------GCCCUCGCgCGCACUGg -5'
29646 5' -58.9 NC_006151.1 + 67459 0.74 0.364137
Target:  5'- gGGGggGUCGCa-GAGCGCGCGcagcagcgGGCa -3'
miRNA:   3'- -CCCuuCAGCGccCUCGCGCGCa-------CUGg -5'
29646 5' -58.9 NC_006151.1 + 117443 0.74 0.371956
Target:  5'- gGGGAAG-CGCGGGucCGCGC-UGGCg -3'
miRNA:   3'- -CCCUUCaGCGCCCucGCGCGcACUGg -5'
29646 5' -58.9 NC_006151.1 + 127383 0.74 0.371956
Target:  5'- cGGggGUgGCGGGGGC-CGCG--GCCg -3'
miRNA:   3'- cCCuuCAgCGCCCUCGcGCGCacUGG- -5'
29646 5' -58.9 NC_006151.1 + 30885 0.74 0.379888
Target:  5'- gGGGAAGagGCGGcgagcgGAGCGCGCGguagcGCCc -3'
miRNA:   3'- -CCCUUCagCGCC------CUCGCGCGCac---UGG- -5'
29646 5' -58.9 NC_006151.1 + 30156 0.74 0.379888
Target:  5'- uGGGAAagagagCGCGGGAGgGCGgGUGAg- -3'
miRNA:   3'- -CCCUUca----GCGCCCUCgCGCgCACUgg -5'
29646 5' -58.9 NC_006151.1 + 57226 0.74 0.387933
Target:  5'- aGGccGUCGCaGGcGGCGCGCGcGGCCu -3'
miRNA:   3'- cCCuuCAGCGcCC-UCGCGCGCaCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.