miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29646 5' -58.9 NC_006151.1 + 61761 0.74 0.396089
Target:  5'- ---cGGUCGCGGGGGCcguggugcugcgGCGCGaGGCCg -3'
miRNA:   3'- cccuUCAGCGCCCUCG------------CGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 76694 0.73 0.404355
Target:  5'- gGGGGAGaguggCGCGGGcGCGC-CGcGGCCg -3'
miRNA:   3'- -CCCUUCa----GCGCCCuCGCGcGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 93557 0.73 0.412728
Target:  5'- uGGGaAAGUccgcCGCGGGGGCGgGCGc-GCCa -3'
miRNA:   3'- -CCC-UUCA----GCGCCCUCGCgCGCacUGG- -5'
29646 5' -58.9 NC_006151.1 + 99242 0.73 0.412728
Target:  5'- --cAGGUCGUGGaGGCGCuCGUGACCg -3'
miRNA:   3'- cccUUCAGCGCCcUCGCGcGCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 75212 0.73 0.412728
Target:  5'- -cGAGGgCGUcGGGGCGCGCGUcGGCCa -3'
miRNA:   3'- ccCUUCaGCGcCCUCGCGCGCA-CUGG- -5'
29646 5' -58.9 NC_006151.1 + 93670 0.73 0.412728
Target:  5'- aGGAGgcuGUCGCGcGGGGCGCGCGc--CCg -3'
miRNA:   3'- cCCUU---CAGCGC-CCUCGCGCGCacuGG- -5'
29646 5' -58.9 NC_006151.1 + 64346 0.73 0.420355
Target:  5'- cGGGAAG-CGCGGGccgucggccccccAGCGCacggucgagGCcGUGGCCa -3'
miRNA:   3'- -CCCUUCaGCGCCC-------------UCGCG---------CG-CACUGG- -5'
29646 5' -58.9 NC_006151.1 + 86153 0.73 0.421208
Target:  5'- cGGGGAGcUCGCGcuGAcGCGCGagauCGUGGCCg -3'
miRNA:   3'- -CCCUUC-AGCGCc-CU-CGCGC----GCACUGG- -5'
29646 5' -58.9 NC_006151.1 + 44369 0.73 0.422062
Target:  5'- gGGGAgagGGUugcgacggucccgcCGCGGGGGCGCcgaggagggaggggcGCGUGugCa -3'
miRNA:   3'- -CCCU---UCA--------------GCGCCCUCGCG---------------CGCACugG- -5'
29646 5' -58.9 NC_006151.1 + 135010 0.73 0.429792
Target:  5'- cGGggG-CGCGGGGGgGCagcaGCGgGGCCg -3'
miRNA:   3'- cCCuuCaGCGCCCUCgCG----CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 108425 0.73 0.429792
Target:  5'- uGGGAAgGUgGCGGGAGC-CGCcuccccgGGCCg -3'
miRNA:   3'- -CCCUU-CAgCGCCCUCGcGCGca-----CUGG- -5'
29646 5' -58.9 NC_006151.1 + 64774 0.73 0.438479
Target:  5'- gGGGGcuGGUUGCcGGGGCGCGagcUGGCCa -3'
miRNA:   3'- -CCCU--UCAGCGcCCUCGCGCgc-ACUGG- -5'
29646 5' -58.9 NC_006151.1 + 127218 0.73 0.448148
Target:  5'- cGGGggGUcCGCGGGgccgucacacgcgccAGCucuugcggcgcgacGCGCgGUGGCCg -3'
miRNA:   3'- -CCCuuCA-GCGCCC---------------UCG--------------CGCG-CACUGG- -5'
29646 5' -58.9 NC_006151.1 + 96781 0.72 0.462421
Target:  5'- gGGGAGGUgaGCGgagagucccgagccGGGGCGCGCG-GGCUu -3'
miRNA:   3'- -CCCUUCAg-CGC--------------CCUCGCGCGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 133509 0.72 0.465124
Target:  5'- cGGGggG-CGCGGGAGgaGC-CGUaGCCa -3'
miRNA:   3'- -CCCuuCaGCGCCCUCg-CGcGCAcUGG- -5'
29646 5' -58.9 NC_006151.1 + 130282 0.72 0.465124
Target:  5'- -cGAGGcCGCGGGcGCGCGCc-GGCCg -3'
miRNA:   3'- ccCUUCaGCGCCCuCGCGCGcaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 98359 0.72 0.465124
Target:  5'- cGGgcGUgCGCGGGcucugGGCGCGCGcgcugcgccUGGCCu -3'
miRNA:   3'- cCCuuCA-GCGCCC-----UCGCGCGC---------ACUGG- -5'
29646 5' -58.9 NC_006151.1 + 4154 0.72 0.474192
Target:  5'- gGGGAucgcGUCGC-GGAGCGCgagcaGCGcGGCCg -3'
miRNA:   3'- -CCCUu---CAGCGcCCUCGCG-----CGCaCUGG- -5'
29646 5' -58.9 NC_006151.1 + 27083 0.72 0.474192
Target:  5'- -aGAGGgCGCGGcgcaGGGCGCGCGUGucGCCc -3'
miRNA:   3'- ccCUUCaGCGCC----CUCGCGCGCAC--UGG- -5'
29646 5' -58.9 NC_006151.1 + 14124 0.72 0.483348
Target:  5'- cGGGAGagGCGcGGAGCGCGCcccgaGCCg -3'
miRNA:   3'- cCCUUCagCGC-CCUCGCGCGcac--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.