miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 28516 0.67 0.327252
Target:  5'- gUCCGGCCCGCGgGacGGGCgUCCgggaCCg -3'
miRNA:   3'- -GGGCUGGGCGCgCccCCCGgGGGa---GG- -5'
29647 3' -68.8 NC_006151.1 + 82999 0.67 0.327252
Target:  5'- gCCaCGGCCgcggcgcagaCGCGCGGcGaGGGCCCCaggUCg -3'
miRNA:   3'- -GG-GCUGG----------GCGCGCC-C-CCCGGGGga-GG- -5'
29647 3' -68.8 NC_006151.1 + 84899 0.67 0.327252
Target:  5'- uCCUGGCcaugguguacgCCGCGCGcGGcGCCgCCUCCg -3'
miRNA:   3'- -GGGCUG-----------GGCGCGCcCCcCGGgGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 127666 0.67 0.327252
Target:  5'- gCCGAuCCCGgGCGGgaacuccucgucGGcGGCgCUCUCCu -3'
miRNA:   3'- gGGCU-GGGCgCGCC------------CC-CCGgGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 5770 0.67 0.327252
Target:  5'- aCCGACCgGguccccccuCGCGGGGGaCCaUCUCCg -3'
miRNA:   3'- gGGCUGGgC---------GCGCCCCCcGGgGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 111354 0.67 0.327252
Target:  5'- gCgGAUgggCGCGCGGGgcgaGGGCCCCUcgCCg -3'
miRNA:   3'- gGgCUGg--GCGCGCCC----CCCGGGGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 142838 0.67 0.327252
Target:  5'- uCCCGccCCCGCGUuuuccauuGGggugaauggggaGGGGCCCCCagCg -3'
miRNA:   3'- -GGGCu-GGGCGCG--------CC------------CCCCGGGGGagG- -5'
29647 3' -68.8 NC_006151.1 + 28797 0.67 0.320574
Target:  5'- gUCCGGCCCGCGggacgggcgucCGGGaccggccaaugcGGGCCCCg--- -3'
miRNA:   3'- -GGGCUGGGCGC-----------GCCC------------CCCGGGGgagg -5'
29647 3' -68.8 NC_006151.1 + 104259 0.67 0.320574
Target:  5'- gCCCGagaacGCCgGCGCGGcggcGGGCCCgCCgCUg -3'
miRNA:   3'- -GGGC-----UGGgCGCGCCc---CCCGGG-GGaGG- -5'
29647 3' -68.8 NC_006151.1 + 17804 0.67 0.320574
Target:  5'- cCCCgGACCCccccuccuggGCGCGGcGGGGCgggcggccaccaCCCgCUCg -3'
miRNA:   3'- -GGG-CUGGG----------CGCGCC-CCCCG------------GGG-GAGg -5'
29647 3' -68.8 NC_006151.1 + 31918 0.67 0.320574
Target:  5'- uCCCGcguCCUGCGUcacgggaccGGGGGGUCCCgCgugaugacgCCg -3'
miRNA:   3'- -GGGCu--GGGCGCG---------CCCCCCGGGG-Ga--------GG- -5'
29647 3' -68.8 NC_006151.1 + 90713 0.67 0.318591
Target:  5'- gCCCGcCCCGCaggcggcggcgacgGUGGcGGcGGCgCCCUCg -3'
miRNA:   3'- -GGGCuGGGCG--------------CGCC-CC-CCGgGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 109269 0.68 0.313999
Target:  5'- cCCCGACgU-CGCuGGccGCCCCCUCCg -3'
miRNA:   3'- -GGGCUGgGcGCGcCCccCGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 11579 0.68 0.313999
Target:  5'- cCCCG-CCCGC-CGGGGGagGCuUCCCggaaCCa -3'
miRNA:   3'- -GGGCuGGGCGcGCCCCC--CG-GGGGa---GG- -5'
29647 3' -68.8 NC_006151.1 + 14913 0.68 0.307527
Target:  5'- cCCCGGCCCaCGaccccgguccCGGGGagcaGCCCCCcgUCCc -3'
miRNA:   3'- -GGGCUGGGcGC----------GCCCCc---CGGGGG--AGG- -5'
29647 3' -68.8 NC_006151.1 + 123904 0.68 0.301157
Target:  5'- gCCGugCgGCGCGGcGgccgugacgcGGGCCgCCUCg -3'
miRNA:   3'- gGGCugGgCGCGCC-C----------CCCGGgGGAGg -5'
29647 3' -68.8 NC_006151.1 + 10578 0.68 0.301157
Target:  5'- gCCGGCUCG-GCGGcccGGCCCuuCCUCCg -3'
miRNA:   3'- gGGCUGGGCgCGCCcc-CCGGG--GGAGG- -5'
29647 3' -68.8 NC_006151.1 + 107664 0.68 0.29489
Target:  5'- gCCGcAgCCGCaGCa-GGGGCCCCCcgCCg -3'
miRNA:   3'- gGGC-UgGGCG-CGccCCCCGGGGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 27998 0.68 0.29489
Target:  5'- uCCCGGCCCacccCGacCGGGGGauCCCCCgcaUCCg -3'
miRNA:   3'- -GGGCUGGGc---GC--GCCCCCc-GGGGG---AGG- -5'
29647 3' -68.8 NC_006151.1 + 11320 0.68 0.29489
Target:  5'- gCCgCGAUaCCGCGCGGGcgauaccgcgcGGGCCgCCCg-- -3'
miRNA:   3'- -GG-GCUG-GGCGCGCCC-----------CCCGG-GGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.