Results 41 - 60 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29647 | 3' | -68.8 | NC_006151.1 | + | 86308 | 0.67 | 0.361447 |
Target: 5'- aCUG-CCCGCaGCuGGGGGCCgugcucgCCCgcgCCg -3' miRNA: 3'- gGGCuGGGCG-CGcCCCCCGG-------GGGa--GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 101696 | 0.67 | 0.361447 |
Target: 5'- -aCGAgCCGUacguggaGCGGGcGGUgCCCUCCg -3' miRNA: 3'- ggGCUgGGCG-------CGCCCcCCGgGGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 54145 | 0.67 | 0.361447 |
Target: 5'- cCCCGGCggcgCCGCGgaggaGGcuaauaaccuguuGGGcGCCCCCUCg -3' miRNA: 3'- -GGGCUG----GGCGCg----CC-------------CCC-CGGGGGAGg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 142095 | 0.67 | 0.354983 |
Target: 5'- gCCCgcagGACCUGCGCGGGcuGGGUgaagCCCaCCg -3' miRNA: 3'- -GGG----CUGGGCGCGCCC--CCCGg---GGGaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 38985 | 0.67 | 0.354983 |
Target: 5'- cCCUGGCgcacaucgCCGCGCGccgcGGcGCCCCgCUCCg -3' miRNA: 3'- -GGGCUG--------GGCGCGCc---CCcCGGGG-GAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 133004 | 0.67 | 0.354983 |
Target: 5'- uCCCu-UCCGCcCGGGGGuGCUCUCgUCCa -3' miRNA: 3'- -GGGcuGGGCGcGCCCCC-CGGGGG-AGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 133153 | 0.67 | 0.347898 |
Target: 5'- aCUCGGCggCgGCGCGGGcguGGGCCUCggCCa -3' miRNA: 3'- -GGGCUG--GgCGCGCCC---CCCGGGGgaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 78955 | 0.67 | 0.347898 |
Target: 5'- gCCCG-CCCGCcuCGGucucGGuGCCCCCcCCg -3' miRNA: 3'- -GGGCuGGGCGc-GCCc---CC-CGGGGGaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 111826 | 0.67 | 0.345792 |
Target: 5'- gCCCGuggaccuggaagacGCaCCGCGuCGGGGGGCgCUCggggUCg -3' miRNA: 3'- -GGGC--------------UG-GGCGC-GCCCCCCGgGGGa---GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 3962 | 0.67 | 0.340914 |
Target: 5'- gCCCGGgCCGCGCGGcGGccucggcgagccGGCCgCggCCa -3' miRNA: 3'- -GGGCUgGGCGCGCC-CC------------CCGGgGgaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 40454 | 0.67 | 0.340914 |
Target: 5'- cCCCGgcGCCUGCcucccCGGcccGGuGGCCCuCCUCCu -3' miRNA: 3'- -GGGC--UGGGCGc----GCC---CC-CCGGG-GGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 2179 | 0.67 | 0.340914 |
Target: 5'- gCCGGCCCcgGCGCccGaGGCCCCCgcgggCCg -3' miRNA: 3'- gGGCUGGG--CGCGccCcCCGGGGGa----GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 14234 | 0.67 | 0.334031 |
Target: 5'- aCCCGACgguaCCGgaUGCGGGGGauCCCCCggUCg -3' miRNA: 3'- -GGGCUG----GGC--GCGCCCCCc-GGGGGa-GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 48719 | 0.67 | 0.334031 |
Target: 5'- gCCCGGCCCGCGaaGGGcacGCCCgCggcgUCg -3' miRNA: 3'- -GGGCUGGGCGCgcCCCc--CGGGgGa---GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 59845 | 0.67 | 0.334031 |
Target: 5'- aCCGGCCgGUcCGGGGGGCgCagCUgCCg -3' miRNA: 3'- gGGCUGGgCGcGCCCCCCGgGg-GA-GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 96799 | 0.67 | 0.334031 |
Target: 5'- uCCCGAgCCggggCGCGCGGGcuuuuagcggcGGGCCCgCCa-- -3' miRNA: 3'- -GGGCU-GG----GCGCGCCC-----------CCCGGG-GGagg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 101753 | 0.67 | 0.334031 |
Target: 5'- aCCCGGCggccgCCGCGCcgccgacGcGGGGCCCCggggCCa -3' miRNA: 3'- -GGGCUG-----GGCGCGc------C-CCCCGGGGga--GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 136631 | 0.67 | 0.333349 |
Target: 5'- aCgGACCC-CGCGGcgcccguGGGGCgcucgCCCCUCg -3' miRNA: 3'- gGgCUGGGcGCGCC-------CCCCG-----GGGGAGg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 111354 | 0.67 | 0.327252 |
Target: 5'- gCgGAUgggCGCGCGGGgcgaGGGCCCCUcgCCg -3' miRNA: 3'- gGgCUGg--GCGCGCCC----CCCGGGGGa-GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 5770 | 0.67 | 0.327252 |
Target: 5'- aCCGACCgGguccccccuCGCGGGGGaCCaUCUCCg -3' miRNA: 3'- gGGCUGGgC---------GCGCCCCCcGGgGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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