miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 114314 0.66 0.384331
Target:  5'- -aCGugCUGCGCGacGGGGGCCUgCg-- -3'
miRNA:   3'- ggGCugGGCGCGC--CCCCCGGGgGagg -5'
29647 3' -68.8 NC_006151.1 + 130925 0.66 0.383578
Target:  5'- gCCgGGCCCGCgggggcgggggcgGCGGGGGGUCgCg--- -3'
miRNA:   3'- -GGgCUGGGCG-------------CGCCCCCCGGgGgagg -5'
29647 3' -68.8 NC_006151.1 + 6850 0.66 0.376845
Target:  5'- gCCCGGCCCcCGCGGcGGccaucuuGCCCCaUCg -3'
miRNA:   3'- -GGGCUGGGcGCGCC-CCc------CGGGGgAGg -5'
29647 3' -68.8 NC_006151.1 + 37330 0.66 0.375359
Target:  5'- aCCGAcgggccgcugcucacCCCGCuCGGGGaGCCcuggcccggcuccgaCCCUCCg -3'
miRNA:   3'- gGGCU---------------GGGCGcGCCCCcCGG---------------GGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 4789 0.66 0.369458
Target:  5'- gCCCGGCCgCgGCGCGGuagcGGGCCgCggCCu -3'
miRNA:   3'- -GGGCUGG-G-CGCGCCc---CCCGGgGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 5370 0.66 0.369458
Target:  5'- gCCGGCggggCUGUcucuGCGGGGGcGCCCCg-CCg -3'
miRNA:   3'- gGGCUG----GGCG----CGCCCCC-CGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 50395 0.66 0.369458
Target:  5'- cCCCGcgguCCuCGCGCGGcccccccgacgaGGaGGCgCCCCUgCg -3'
miRNA:   3'- -GGGCu---GG-GCGCGCC------------CC-CCG-GGGGAgG- -5'
29647 3' -68.8 NC_006151.1 + 106790 0.66 0.369458
Target:  5'- aCCUGGCCgCG-GCGGcggugcucgucGGGGCCCCgCUg- -3'
miRNA:   3'- -GGGCUGG-GCgCGCC-----------CCCCGGGG-GAgg -5'
29647 3' -68.8 NC_006151.1 + 136819 0.66 0.369458
Target:  5'- gCCGACgcgCCGCGCGGGcucugcgacGcGGCCgCCggCCu -3'
miRNA:   3'- gGGCUG---GGCGCGCCC---------C-CCGGgGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 78528 0.66 0.369458
Target:  5'- gCgGACCCG-GCGGGGG-CCUCg-CCg -3'
miRNA:   3'- gGgCUGGGCgCGCCCCCcGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 101091 0.66 0.367261
Target:  5'- cCCCGACCUGgGgccCGGGucGGGCgucucgugccugcgCUCCUCCc -3'
miRNA:   3'- -GGGCUGGGCgC---GCCC--CCCG--------------GGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 105545 0.67 0.365073
Target:  5'- gCCCGAgcugcggcacgacgcCCUGCGCGcgcuGGcGGCCgCCUUCg -3'
miRNA:   3'- -GGGCU---------------GGGCGCGCc---CC-CCGGgGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 49622 0.67 0.365073
Target:  5'- gCgGugCUGCGCgaguggGGGuGGGCCguggaggaggucgagCCCUCCg -3'
miRNA:   3'- gGgCugGGCGCG------CCC-CCCGG---------------GGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 5871 0.67 0.36217
Target:  5'- gCCCgGGgCCGC-C-GGGGGCCCCggCCu -3'
miRNA:   3'- -GGG-CUgGGCGcGcCCCCCGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 37258 0.67 0.36217
Target:  5'- gCCCGGCCCccGCGCaGGaaGCgCCgCUCCa -3'
miRNA:   3'- -GGGCUGGG--CGCGcCCccCGgGG-GAGG- -5'
29647 3' -68.8 NC_006151.1 + 48531 0.67 0.36217
Target:  5'- gCCGcCgCUGCGCuauaauGGaGGGCCCCCcgCCg -3'
miRNA:   3'- gGGCuG-GGCGCGc-----CC-CCCGGGGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 105448 0.67 0.36217
Target:  5'- aCUCGGCgCGCGCc-GGGGCCCugggcgacuuCUUCCg -3'
miRNA:   3'- -GGGCUGgGCGCGccCCCCGGG----------GGAGG- -5'
29647 3' -68.8 NC_006151.1 + 72028 0.67 0.36217
Target:  5'- -gCGcCCCGCGCGGGc-GCCCCg-CCg -3'
miRNA:   3'- ggGCuGGGCGCGCCCccCGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 112090 0.67 0.36217
Target:  5'- cCCCGGgUCGgGCGGcggacuuuauaGGGcGCCCagCUCCa -3'
miRNA:   3'- -GGGCUgGGCgCGCC-----------CCC-CGGGg-GAGG- -5'
29647 3' -68.8 NC_006151.1 + 101696 0.67 0.361447
Target:  5'- -aCGAgCCGUacguggaGCGGGcGGUgCCCUCCg -3'
miRNA:   3'- ggGCUgGGCG-------CGCCCcCCGgGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.