Results 21 - 40 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29647 | 3' | -68.8 | NC_006151.1 | + | 50830 | 0.73 | 0.134521 |
Target: 5'- cCUCGGCCCGCGCcGccguccccucGGcGGCCgCCCUCCc -3' miRNA: 3'- -GGGCUGGGCGCGcC----------CC-CCGG-GGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 57509 | 0.73 | 0.13771 |
Target: 5'- gCUCGGCCgCG-GCGGcGGcGGCCgCCUCCg -3' miRNA: 3'- -GGGCUGG-GCgCGCC-CC-CCGGgGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 33882 | 0.73 | 0.13771 |
Target: 5'- uCCCGGaccccCCCGgGgGcGGGGGCCUcgcgCCUCCg -3' miRNA: 3'- -GGGCU-----GGGCgCgC-CCCCCGGG----GGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 37024 | 0.73 | 0.140969 |
Target: 5'- gCCGcCgCCGCGCGGcGcucGGCCUCCUCCu -3' miRNA: 3'- gGGCuG-GGCGCGCC-Cc--CCGGGGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 37183 | 0.73 | 0.144298 |
Target: 5'- gCCgCGGCCC-CGCGGcccucGGCCUCCUCCg -3' miRNA: 3'- -GG-GCUGGGcGCGCCcc---CCGGGGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 81295 | 0.72 | 0.147699 |
Target: 5'- gCgCGGCgCGCGCGacGGGGUCCuCCUCCu -3' miRNA: 3'- -GgGCUGgGCGCGCc-CCCCGGG-GGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 3560 | 0.72 | 0.147699 |
Target: 5'- gCCCGAgUCCGagggaGCGGcgcuugcgccGGGGCCCCCggUCCu -3' miRNA: 3'- -GGGCU-GGGCg----CGCC----------CCCCGGGGG--AGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 90485 | 0.72 | 0.151172 |
Target: 5'- -aUGGCUCGC-CGGGGcGGCaacCCCCUCCg -3' miRNA: 3'- ggGCUGGGCGcGCCCC-CCG---GGGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 125250 | 0.72 | 0.15472 |
Target: 5'- cCCCGGCCCG-GCGGGGacGCCCgagCCgCCg -3' miRNA: 3'- -GGGCUGGGCgCGCCCCc-CGGG---GGaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 8250 | 0.72 | 0.158343 |
Target: 5'- gCCgGGCCgGCGCGccGGGaCgCCCCUCCg -3' miRNA: 3'- -GGgCUGGgCGCGCccCCC-G-GGGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 135031 | 0.72 | 0.169285 |
Target: 5'- gCgGGgCCGCGUcguccucGGGGcGGuCCCCCUCCu -3' miRNA: 3'- gGgCUgGGCGCG-------CCCC-CC-GGGGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 40067 | 0.72 | 0.169675 |
Target: 5'- aCCGGCCCGCGgGGGccucGGGCgCCggggCCg -3' miRNA: 3'- gGGCUGGGCGCgCCC----CCCGgGGga--GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 55459 | 0.71 | 0.173611 |
Target: 5'- gCCGGcCCCGC-CGGGGGGCgcgcgCCCggcgCCg -3' miRNA: 3'- gGGCU-GGGCGcGCCCCCCGg----GGGa---GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 36360 | 0.71 | 0.173611 |
Target: 5'- cCCCGgcagcACUCGCaGCGGcagaggccGGGGCCCCCggcggCCc -3' miRNA: 3'- -GGGC-----UGGGCG-CGCC--------CCCCGGGGGa----GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 10655 | 0.71 | 0.175207 |
Target: 5'- cCCCG-CCCagGCgGCGGGGGagcgcggagcgcgccGCCCCC-CCg -3' miRNA: 3'- -GGGCuGGG--CG-CGCCCCC---------------CGGGGGaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 13981 | 0.71 | 0.177628 |
Target: 5'- gCCgGGCCCGCGUccccGGGGcccacgugugaGGCCCCggCCa -3' miRNA: 3'- -GGgCUGGGCGCG----CCCC-----------CCGGGGgaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 137425 | 0.71 | 0.18591 |
Target: 5'- gCCG--CCGcCGCGGGGuccgccuccgcGGCCUCCUCCg -3' miRNA: 3'- gGGCugGGC-GCGCCCC-----------CCGGGGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 109121 | 0.71 | 0.190177 |
Target: 5'- gCCGGCCCGCGCccgccGGccGGGCa-CCUCCg -3' miRNA: 3'- gGGCUGGGCGCGc----CC--CCCGggGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 107356 | 0.71 | 0.190177 |
Target: 5'- aCCCGGCCCGCGgccccgaucccCGGGcuGCCCCC-Cg -3' miRNA: 3'- -GGGCUGGGCGC-----------GCCCccCGGGGGaGg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 720 | 0.71 | 0.190177 |
Target: 5'- aCCGGgggUCCGCGgGcGGGGGCuUCCgCUCCg -3' miRNA: 3'- gGGCU---GGGCGCgC-CCCCCG-GGG-GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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