miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 32873 1.11 0.00021
Target:  5'- gCCCGACCCGCGCGGGGGGCCCCCUCCu -3'
miRNA:   3'- -GGGCUGGGCGCGCCCCCCGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 38384 0.8 0.042119
Target:  5'- gCCGGCgCCgGCgGCGGcGGGcGCCCCCUCCg -3'
miRNA:   3'- gGGCUG-GG-CG-CGCC-CCC-CGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 137401 0.79 0.046486
Target:  5'- gCCUG-CCCGC-CGGGGGGCgCCCUCg -3'
miRNA:   3'- -GGGCuGGGCGcGCCCCCCGgGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 5651 0.77 0.066167
Target:  5'- aCCGGCCCgGCgGCGGGggaggcuggggaagcGGGCCCCCgCCg -3'
miRNA:   3'- gGGCUGGG-CG-CGCCC---------------CCCGGGGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 45527 0.77 0.067141
Target:  5'- gUCGACCCacCGCGGGaGGGCCCgCUUCCc -3'
miRNA:   3'- gGGCUGGGc-GCGCCC-CCCGGG-GGAGG- -5'
29647 3' -68.8 NC_006151.1 + 117522 0.76 0.087653
Target:  5'- -aCGGgCCGCuC-GGGGGCCCCCUCCc -3'
miRNA:   3'- ggGCUgGGCGcGcCCCCCGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 5332 0.75 0.098838
Target:  5'- gCCgCGGCCgCG-GCGGaGGGcGCCCUCUCCg -3'
miRNA:   3'- -GG-GCUGG-GCgCGCC-CCC-CGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 36906 0.75 0.106183
Target:  5'- gCCGGCgCCGCGCcGGaGaGGCgCCCUCCg -3'
miRNA:   3'- gGGCUG-GGCGCGcCC-C-CCGgGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 9389 0.74 0.108743
Target:  5'- gCCC--CCCGCGCGGGucGGGCCUUCUUCc -3'
miRNA:   3'- -GGGcuGGGCGCGCCC--CCCGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 9034 0.74 0.114038
Target:  5'- uCCCG-CCCGC-CGGGGcGCCCCgcgugCUCCg -3'
miRNA:   3'- -GGGCuGGGCGcGCCCCcCGGGG-----GAGG- -5'
29647 3' -68.8 NC_006151.1 + 40230 0.74 0.114038
Target:  5'- cCCCuACCUGCugcuccgcugaGCGGGGcGCCCCCUCg -3'
miRNA:   3'- -GGGcUGGGCG-----------CGCCCCcCGGGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 31237 0.74 0.116775
Target:  5'- gCCGGCCCGgcgagcgaGCGGgcgggcgagccGGGGCCCCCggcCCg -3'
miRNA:   3'- gGGCUGGGCg-------CGCC-----------CCCCGGGGGa--GG- -5'
29647 3' -68.8 NC_006151.1 + 95966 0.74 0.119573
Target:  5'- gCCCGACgCCGcCGCGgcgcagcaggauGGGGGCCaCCUcgUCCg -3'
miRNA:   3'- -GGGCUG-GGC-GCGC------------CCCCCGG-GGG--AGG- -5'
29647 3' -68.8 NC_006151.1 + 124674 0.74 0.122433
Target:  5'- -aCGGCCUGCGCGaGGGGGCCCa---- -3'
miRNA:   3'- ggGCUGGGCGCGC-CCCCCGGGggagg -5'
29647 3' -68.8 NC_006151.1 + 127725 0.74 0.122433
Target:  5'- cCCCGGcgucCCCGuCGCGGGcGGGaaccggucauCCUCCUCCu -3'
miRNA:   3'- -GGGCU----GGGC-GCGCCC-CCC----------GGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 49210 0.73 0.125357
Target:  5'- aCCGugCgGCGCGGGGuccccGGCUCCCacgCCc -3'
miRNA:   3'- gGGCugGgCGCGCCCC-----CCGGGGGa--GG- -5'
29647 3' -68.8 NC_006151.1 + 4041 0.73 0.125357
Target:  5'- -gCGGCCU-CGCGGGcgcGGGCCCCgUCCa -3'
miRNA:   3'- ggGCUGGGcGCGCCC---CCCGGGGgAGG- -5'
29647 3' -68.8 NC_006151.1 + 142149 0.73 0.128346
Target:  5'- gCCUGcGCCgGCGCaGGGGGCUCguccaCCUCCa -3'
miRNA:   3'- -GGGC-UGGgCGCGcCCCCCGGG-----GGAGG- -5'
29647 3' -68.8 NC_006151.1 + 39531 0.73 0.1314
Target:  5'- gCCCGgccugcuucGCCCGCGUGGa-GGCCUCCUUCg -3'
miRNA:   3'- -GGGC---------UGGGCGCGCCccCCGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 50830 0.73 0.134521
Target:  5'- cCUCGGCCCGCGCcGccguccccucGGcGGCCgCCCUCCc -3'
miRNA:   3'- -GGGCUGGGCGCGcC----------CC-CCGG-GGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.