miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 720 0.71 0.190177
Target:  5'- aCCGGgggUCCGCGgGcGGGGGCuUCCgCUCCg -3'
miRNA:   3'- gGGCU---GGGCGCgC-CCCCCG-GGG-GAGG- -5'
29647 3' -68.8 NC_006151.1 + 2001 0.69 0.253852
Target:  5'- gUCCGGCCgG-GCcgaGGGGGcGCCCCgCUCa -3'
miRNA:   3'- -GGGCUGGgCgCG---CCCCC-CGGGG-GAGg -5'
29647 3' -68.8 NC_006151.1 + 2179 0.67 0.340914
Target:  5'- gCCGGCCCcgGCGCccGaGGCCCCCgcgggCCg -3'
miRNA:   3'- gGGCUGGG--CGCGccCcCCGGGGGa----GG- -5'
29647 3' -68.8 NC_006151.1 + 3127 0.68 0.282661
Target:  5'- uCCCaGgCCGgGCGcGGGGCgCCCUCg -3'
miRNA:   3'- -GGGcUgGGCgCGCcCCCCGgGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 3560 0.72 0.147699
Target:  5'- gCCCGAgUCCGagggaGCGGcgcuugcgccGGGGCCCCCggUCCu -3'
miRNA:   3'- -GGGCU-GGGCg----CGCC----------CCCCGGGGG--AGG- -5'
29647 3' -68.8 NC_006151.1 + 3627 0.66 0.391915
Target:  5'- gCCGuCCC-CGCGGaGGGCcgcgccggagagCCCCUCg -3'
miRNA:   3'- gGGCuGGGcGCGCCcCCCG------------GGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 3962 0.67 0.340914
Target:  5'- gCCCGGgCCGCGCGGcGGccucggcgagccGGCCgCggCCa -3'
miRNA:   3'- -GGGCUgGGCGCGCC-CC------------CCGGgGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 4041 0.73 0.125357
Target:  5'- -gCGGCCU-CGCGGGcgcGGGCCCCgUCCa -3'
miRNA:   3'- ggGCUGGGcGCGCCC---CCCGGGGgAGG- -5'
29647 3' -68.8 NC_006151.1 + 4789 0.66 0.369458
Target:  5'- gCCCGGCCgCgGCGCGGuagcGGGCCgCggCCu -3'
miRNA:   3'- -GGGCUGG-G-CGCGCCc---CCCGGgGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 5118 0.68 0.276108
Target:  5'- -gCGGCCCgGCGCGGGcgaguggggcgccGGGCCggaCUCCu -3'
miRNA:   3'- ggGCUGGG-CGCGCCC-------------CCCGGgg-GAGG- -5'
29647 3' -68.8 NC_006151.1 + 5332 0.75 0.098838
Target:  5'- gCCgCGGCCgCG-GCGGaGGGcGCCCUCUCCg -3'
miRNA:   3'- -GG-GCUGG-GCgCGCC-CCC-CGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 5370 0.66 0.369458
Target:  5'- gCCGGCggggCUGUcucuGCGGGGGcGCCCCg-CCg -3'
miRNA:   3'- gGGCUG----GGCG----CGCCCCC-CGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 5651 0.77 0.066167
Target:  5'- aCCGGCCCgGCgGCGGGggaggcuggggaagcGGGCCCCCgCCg -3'
miRNA:   3'- gGGCUGGG-CG-CGCCC---------------CCCGGGGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 5770 0.67 0.327252
Target:  5'- aCCGACCgGguccccccuCGCGGGGGaCCaUCUCCg -3'
miRNA:   3'- gGGCUGGgC---------GCGCCCCCcGGgGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 5871 0.67 0.36217
Target:  5'- gCCCgGGgCCGC-C-GGGGGCCCCggCCu -3'
miRNA:   3'- -GGG-CUgGGCGcGcCCCCCGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 5998 0.66 0.391915
Target:  5'- gCCCGAccgggggaCCCG-GCGGccGGGGacccgggcucguCCUCCUCCu -3'
miRNA:   3'- -GGGCU--------GGGCgCGCC--CCCC------------GGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 6850 0.66 0.376845
Target:  5'- gCCCGGCCCcCGCGGcGGccaucuuGCCCCaUCg -3'
miRNA:   3'- -GGGCUGGGcGCGCC-CCc------CGGGGgAGg -5'
29647 3' -68.8 NC_006151.1 + 8250 0.72 0.158343
Target:  5'- gCCgGGCCgGCGCGccGGGaCgCCCCUCCg -3'
miRNA:   3'- -GGgCUGGgCGCGCccCCC-G-GGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 8350 0.68 0.282661
Target:  5'- gCCCG-CCgGaCGCGGaGGcgcgaGGCCCCCgCCc -3'
miRNA:   3'- -GGGCuGGgC-GCGCC-CC-----CCGGGGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 9034 0.74 0.114038
Target:  5'- uCCCG-CCCGC-CGGGGcGCCCCgcgugCUCCg -3'
miRNA:   3'- -GGGCuGGGCGcGCCCCcCGGGG-----GAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.