miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 142838 0.67 0.327252
Target:  5'- uCCCGccCCCGCGUuuuccauuGGggugaauggggaGGGGCCCCCagCg -3'
miRNA:   3'- -GGGCu-GGGCGCG--------CC------------CCCCGGGGGagG- -5'
29647 3' -68.8 NC_006151.1 + 142149 0.73 0.128346
Target:  5'- gCCUGcGCCgGCGCaGGGGGCUCguccaCCUCCa -3'
miRNA:   3'- -GGGC-UGGgCGCGcCCCCCGGG-----GGAGG- -5'
29647 3' -68.8 NC_006151.1 + 142095 0.67 0.354983
Target:  5'- gCCCgcagGACCUGCGCGGGcuGGGUgaagCCCaCCg -3'
miRNA:   3'- -GGG----CUGGGCGCGCCC--CCCGg---GGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 141839 0.68 0.288725
Target:  5'- uCCCGcGCUCGaCGCGaGGGGCUcgcgccgcgCCCUCUg -3'
miRNA:   3'- -GGGC-UGGGC-GCGCcCCCCGG---------GGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 141641 0.68 0.276698
Target:  5'- gCCGcGgCgGCGCGGcGGGGCCCCgcgggCUCg -3'
miRNA:   3'- gGGC-UgGgCGCGCC-CCCCGGGG-----GAGg -5'
29647 3' -68.8 NC_006151.1 + 139637 0.69 0.247846
Target:  5'- aUCCGGCgCCgGCGCGGGGGucgcggcgggcgcGCCgCCCgacaggCCc -3'
miRNA:   3'- -GGGCUG-GG-CGCGCCCCC-------------CGG-GGGa-----GG- -5'
29647 3' -68.8 NC_006151.1 + 137425 0.71 0.18591
Target:  5'- gCCG--CCGcCGCGGGGuccgccuccgcGGCCUCCUCCg -3'
miRNA:   3'- gGGCugGGC-GCGCCCC-----------CCGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 137401 0.79 0.046486
Target:  5'- gCCUG-CCCGC-CGGGGGGCgCCCUCg -3'
miRNA:   3'- -GGGCuGGGCGcGCCCCCCGgGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 136819 0.66 0.369458
Target:  5'- gCCGACgcgCCGCGCGGGcucugcgacGcGGCCgCCggCCu -3'
miRNA:   3'- gGGCUG---GGCGCGCCC---------C-CCGGgGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 136631 0.67 0.333349
Target:  5'- aCgGACCC-CGCGGcgcccguGGGGCgcucgCCCCUCg -3'
miRNA:   3'- gGgCUGGGcGCGCC-------CCCCG-----GGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 135915 0.66 0.385085
Target:  5'- cCCCGGCggucgugcgcgcgcuCUGcCGCGGGGaGCCCCUcgcggcgcgggacgUCCu -3'
miRNA:   3'- -GGGCUG---------------GGC-GCGCCCCcCGGGGG--------------AGG- -5'
29647 3' -68.8 NC_006151.1 + 135031 0.72 0.169285
Target:  5'- gCgGGgCCGCGUcguccucGGGGcGGuCCCCCUCCu -3'
miRNA:   3'- gGgCUgGGCGCG-------CCCC-CC-GGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 134834 0.7 0.222515
Target:  5'- -gCGACCgCGCGCGcacacacgcGGGGCCCgCUCUu -3'
miRNA:   3'- ggGCUGG-GCGCGCc--------CCCCGGGgGAGG- -5'
29647 3' -68.8 NC_006151.1 + 134751 0.69 0.259414
Target:  5'- cCCCGAgCagCGCGCGcGGGGCCCgCggcuucggCUCCa -3'
miRNA:   3'- -GGGCUgG--GCGCGCcCCCCGGG-G--------GAGG- -5'
29647 3' -68.8 NC_006151.1 + 133153 0.67 0.347898
Target:  5'- aCUCGGCggCgGCGCGGGcguGGGCCUCggCCa -3'
miRNA:   3'- -GGGCUG--GgCGCGCCC---CCCGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 133004 0.67 0.354983
Target:  5'- uCCCu-UCCGCcCGGGGGuGCUCUCgUCCa -3'
miRNA:   3'- -GGGcuGGGCGcGCCCCC-CGGGGG-AGG- -5'
29647 3' -68.8 NC_006151.1 + 131114 0.68 0.282661
Target:  5'- gCCCGGCCgCgGCGCGGGaGGCCgCggcgCCg -3'
miRNA:   3'- -GGGCUGG-G-CGCGCCCcCCGGgGga--GG- -5'
29647 3' -68.8 NC_006151.1 + 130925 0.66 0.383578
Target:  5'- gCCgGGCCCGCgggggcgggggcgGCGGGGGGUCgCg--- -3'
miRNA:   3'- -GGgCUGGGCG-------------CGCCCCCCGGgGgagg -5'
29647 3' -68.8 NC_006151.1 + 127794 0.7 0.217623
Target:  5'- cCCCGccGCCgCGCGCGGGGGcGCgaggUCCUUgCg -3'
miRNA:   3'- -GGGC--UGG-GCGCGCCCCC-CG----GGGGAgG- -5'
29647 3' -68.8 NC_006151.1 + 127725 0.74 0.122433
Target:  5'- cCCCGGcgucCCCGuCGCGGGcGGGaaccggucauCCUCCUCCu -3'
miRNA:   3'- -GGGCU----GGGC-GCGCCC-CCC----------GGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.