miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 9389 0.74 0.108743
Target:  5'- gCCC--CCCGCGCGGGucGGGCCUUCUUCc -3'
miRNA:   3'- -GGGcuGGGCGCGCCC--CCCGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 10578 0.68 0.301157
Target:  5'- gCCGGCUCG-GCGGcccGGCCCuuCCUCCg -3'
miRNA:   3'- gGGCUGGGCgCGCCcc-CCGGG--GGAGG- -5'
29647 3' -68.8 NC_006151.1 + 10655 0.71 0.175207
Target:  5'- cCCCG-CCCagGCgGCGGGGGagcgcggagcgcgccGCCCCC-CCg -3'
miRNA:   3'- -GGGCuGGG--CG-CGCCCCC---------------CGGGGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 11232 0.67 0.361447
Target:  5'- uCCCGGgCCGCgagggccGCGGcGGcGaCCCCCUUCc -3'
miRNA:   3'- -GGGCUgGGCG-------CGCCcCC-C-GGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 11320 0.68 0.29489
Target:  5'- gCCgCGAUaCCGCGCGGGcgauaccgcgcGGGCCgCCCg-- -3'
miRNA:   3'- -GG-GCUG-GGCGCGCCC-----------CCCGG-GGGagg -5'
29647 3' -68.8 NC_006151.1 + 11451 0.66 0.398823
Target:  5'- uCCCG-CCCGCGUGcccccGGGGCCaucggcuggaacaCCCUgagCCu -3'
miRNA:   3'- -GGGCuGGGCGCGCc----CCCCGG-------------GGGA---GG- -5'
29647 3' -68.8 NC_006151.1 + 11579 0.68 0.313999
Target:  5'- cCCCG-CCCGC-CGGGGGagGCuUCCCggaaCCa -3'
miRNA:   3'- -GGGCuGGGCGcGCCCCC--CG-GGGGa---GG- -5'
29647 3' -68.8 NC_006151.1 + 13422 0.68 0.276698
Target:  5'- gCCgGGCCCGCGUccccGGGGCCCgCauuggCCg -3'
miRNA:   3'- -GGgCUGGGCGCGcc--CCCCGGGgGa----GG- -5'
29647 3' -68.8 NC_006151.1 + 13738 0.7 0.208117
Target:  5'- uCCCGgacGCCCGUcccGCGGGccGGaccGCCCCCUUCc -3'
miRNA:   3'- -GGGC---UGGGCG---CGCCC--CC---CGGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 13981 0.71 0.177628
Target:  5'- gCCgGGCCCGCGUccccGGGGcccacgugugaGGCCCCggCCa -3'
miRNA:   3'- -GGgCUGGGCGCG----CCCC-----------CCGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 14234 0.67 0.334031
Target:  5'- aCCCGACgguaCCGgaUGCGGGGGauCCCCCggUCg -3'
miRNA:   3'- -GGGCUG----GGC--GCGCCCCCc-GGGGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 14913 0.68 0.307527
Target:  5'- cCCCGGCCCaCGaccccgguccCGGGGagcaGCCCCCcgUCCc -3'
miRNA:   3'- -GGGCUGGGcGC----------GCCCCc---CGGGGG--AGG- -5'
29647 3' -68.8 NC_006151.1 + 15022 0.69 0.243021
Target:  5'- gCCCGACCCcgaggagguGCGCGuccacggcgcGcGGGGCCCCggcgCCu -3'
miRNA:   3'- -GGGCUGGG---------CGCGC----------C-CCCCGGGGga--GG- -5'
29647 3' -68.8 NC_006151.1 + 15330 0.69 0.263935
Target:  5'- -aCGACCCGCGCGuccucuccccgccGGucaucgaGGGCCCgCUCUu -3'
miRNA:   3'- ggGCUGGGCGCGC-------------CC-------CCCGGGgGAGG- -5'
29647 3' -68.8 NC_006151.1 + 15884 0.66 0.391915
Target:  5'- gCCG-CCCGC-CGGGGGacgcGCgCCCCgacgcggCCc -3'
miRNA:   3'- gGGCuGGGCGcGCCCCC----CG-GGGGa------GG- -5'
29647 3' -68.8 NC_006151.1 + 17314 0.66 0.391915
Target:  5'- gCCG-UCCGC-CGGGGGGCgCCgCgUCa -3'
miRNA:   3'- gGGCuGGGCGcGCCCCCCG-GG-GgAGg -5'
29647 3' -68.8 NC_006151.1 + 17804 0.67 0.320574
Target:  5'- cCCCgGACCCccccuccuggGCGCGGcGGGGCgggcggccaccaCCCgCUCg -3'
miRNA:   3'- -GGG-CUGGG----------CGCGCC-CCCCG------------GGG-GAGg -5'
29647 3' -68.8 NC_006151.1 + 18302 0.66 0.391915
Target:  5'- gUCGAagCCGgaGCGGGGcGCCUCCUCg -3'
miRNA:   3'- gGGCUg-GGCg-CGCCCCcCGGGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 21425 0.7 0.212825
Target:  5'- cUCgGGCCUcgggggucgcgGCGUGGGGuGGCCCCCg-- -3'
miRNA:   3'- -GGgCUGGG-----------CGCGCCCC-CCGGGGGagg -5'
29647 3' -68.8 NC_006151.1 + 25399 0.7 0.227499
Target:  5'- uCUCGA-CCGCGaCGGGGGcGCCgCCgccCCa -3'
miRNA:   3'- -GGGCUgGGCGC-GCCCCC-CGGgGGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.