Results 21 - 40 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29648 | 3' | -65.2 | NC_006151.1 | + | 48778 | 0.75 | 0.153882 |
Target: 5'- cGCCUCCgcCCCGCCCcccgacCCCGGGGcGCCc -3' miRNA: 3'- -CGGGGGa-GGGCGGGc-----GGGCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 134929 | 0.75 | 0.157593 |
Target: 5'- cUUCCCUCCCGCCCGCCCucuccGGcUACa -3' miRNA: 3'- cGGGGGAGGGCGGGCGGGcu---CC-AUGg -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 48554 | 0.74 | 0.161768 |
Target: 5'- gGCCCCCcgccgaguaagagacCCUGCggccugCCGCCCGGGGUGCg -3' miRNA: 3'- -CGGGGGa--------------GGGCG------GGCGGGCUCCAUGg -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 100153 | 0.74 | 0.165258 |
Target: 5'- cGCgCCCUCCgGCgCCGCCUgGAGGacaugGCCa -3' miRNA: 3'- -CGgGGGAGGgCG-GGCGGG-CUCCa----UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 44870 | 0.74 | 0.165258 |
Target: 5'- cGCCCUCUCUCGCCCGaCCuCGGcGGUGu- -3' miRNA: 3'- -CGGGGGAGGGCGGGC-GG-GCU-CCAUgg -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 66021 | 0.74 | 0.169215 |
Target: 5'- cGCCUCCgcaaagUCCGCCCGCgUGAaccgccGGUGCCu -3' miRNA: 3'- -CGGGGGa-----GGGCGGGCGgGCU------CCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 39556 | 0.74 | 0.169215 |
Target: 5'- gGCCUCCUucgCCCGCCUGCaccCCGGGGccgaGCCg -3' miRNA: 3'- -CGGGGGA---GGGCGGGCG---GGCUCCa---UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 11436 | 0.74 | 0.169215 |
Target: 5'- cGCCCacgcaacuCCUCCCGCCCGCgugcccCCGGGG--CCa -3' miRNA: 3'- -CGGG--------GGAGGGCGGGCG------GGCUCCauGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 137416 | 0.74 | 0.181598 |
Target: 5'- gGCgCCCUCgCCG-CCGCCgCGGGGUccGCCu -3' miRNA: 3'- -CGgGGGAG-GGCgGGCGG-GCUCCA--UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 84531 | 0.73 | 0.1846 |
Target: 5'- cGCCCCCguUCCCcgugggcuucuggGCCCGCCCGGGcuucagcgaggGCCu -3' miRNA: 3'- -CGGGGG--AGGG-------------CGGGCGGGCUCca---------UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 38165 | 0.73 | 0.1859 |
Target: 5'- uGUCgCCCUCgUCGCCCGCaCCGuGGcGCCg -3' miRNA: 3'- -CGG-GGGAG-GGCGGGCG-GGCuCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 124664 | 0.73 | 0.190293 |
Target: 5'- uCCCCCUUCUacgGCCUGCgCGAGGggGCCc -3' miRNA: 3'- cGGGGGAGGG---CGGGCGgGCUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 10855 | 0.73 | 0.190293 |
Target: 5'- uCCCCUUCCCcucgccccgGCCC-CCCGGcuuGGUGCCg -3' miRNA: 3'- cGGGGGAGGG---------CGGGcGGGCU---CCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 74166 | 0.73 | 0.190293 |
Target: 5'- uGCCCaCCUCCuCGUCCGUCUcGGGcACCa -3' miRNA: 3'- -CGGG-GGAGG-GCGGGCGGGcUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 59327 | 0.73 | 0.192972 |
Target: 5'- cGCCCCCgCCCGCCCccagcgcgcucaggGCCgcgcgcaCGGGGcGCCg -3' miRNA: 3'- -CGGGGGaGGGCGGG--------------CGG-------GCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 40014 | 0.73 | 0.194776 |
Target: 5'- uGCCCCCUucgagaccagcgUCCGCgccgCCGCCgGGGGcGCCg -3' miRNA: 3'- -CGGGGGA------------GGGCG----GGCGGgCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 69510 | 0.73 | 0.199352 |
Target: 5'- cGCCUCCUCCgccgcCGCgCCGCgCGAGGgcGCCc -3' miRNA: 3'- -CGGGGGAGG-----GCG-GGCGgGCUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 44004 | 0.73 | 0.199352 |
Target: 5'- aCCCCCcCCCGCagcccCCGCCCcgcGGGGaGCCg -3' miRNA: 3'- cGGGGGaGGGCG-----GGCGGG---CUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 137652 | 0.73 | 0.20402 |
Target: 5'- cGCCCCCgUCCCggcggacgagcGCCCGCCgUGcGGcUGCCg -3' miRNA: 3'- -CGGGGG-AGGG-----------CGGGCGG-GCuCC-AUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 97926 | 0.73 | 0.20402 |
Target: 5'- cGCCgCCgaggCCgCGCCCGCCCucgucGAGGgcgaGCCa -3' miRNA: 3'- -CGGgGGa---GG-GCGGGCGGG-----CUCCa---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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