Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29648 | 3' | -65.2 | NC_006151.1 | + | 34259 | 1.13 | 0.000274 |
Target: 5'- cGCCCCCUCCCGCCCGCCCGAGGUACCg -3' miRNA: 3'- -CGGGGGAGGGCGGGCGGGCUCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 9028 | 0.88 | 0.017304 |
Target: 5'- aCCCCCUCCCGCCCG-CCGGGGcGCCc -3' miRNA: 3'- cGGGGGAGGGCGGGCgGGCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 38891 | 0.84 | 0.036385 |
Target: 5'- cGCCgCCUaCUGCCCGCCCGAGGUgGCCc -3' miRNA: 3'- -CGGgGGAgGGCGGGCGGGCUCCA-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 81332 | 0.82 | 0.050619 |
Target: 5'- cGCCCCCUCguccgucgccgCCGCCgCGCCCGGGGccCCg -3' miRNA: 3'- -CGGGGGAG-----------GGCGG-GCGGGCUCCauGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 60700 | 0.81 | 0.051915 |
Target: 5'- cGCCCgCCgcgCCCGCCgCGaccucggcCCCGAGGUGCCg -3' miRNA: 3'- -CGGG-GGa--GGGCGG-GC--------GGGCUCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 38060 | 0.8 | 0.060397 |
Target: 5'- cGCCCUCgggCCCGCCUGCCuCGAGGaggugacgGCCg -3' miRNA: 3'- -CGGGGGa--GGGCGGGCGG-GCUCCa-------UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 9684 | 0.8 | 0.060397 |
Target: 5'- uCCCCCU-CCGCCCGgCCGcGGGUGCCc -3' miRNA: 3'- cGGGGGAgGGCGGGCgGGC-UCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 87688 | 0.79 | 0.071992 |
Target: 5'- cGCuCCCUUCCCGCCCGCcCCGAcg-ACCa -3' miRNA: 3'- -CG-GGGGAGGGCGGGCG-GGCUccaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 100733 | 0.79 | 0.07568 |
Target: 5'- cGCCgCCCgcgCCCGCCuucaCGCCCGAGGaGCUg -3' miRNA: 3'- -CGG-GGGa--GGGCGG----GCGGGCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 50858 | 0.78 | 0.083607 |
Target: 5'- gGCCgCCCUCCCGCgcccccggaccCCGuCCCGGGGccgGCCg -3' miRNA: 3'- -CGG-GGGAGGGCG-----------GGC-GGGCUCCa--UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 32926 | 0.78 | 0.087862 |
Target: 5'- uCCCCCgaggacCCCGCucCCGCCUGuGGUGCCg -3' miRNA: 3'- cGGGGGa-----GGGCG--GGCGGGCuCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 11575 | 0.77 | 0.099416 |
Target: 5'- -aCCCC-CCCGCCCGCCgGGGGagGCUu -3' miRNA: 3'- cgGGGGaGGGCGGGCGGgCUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 46830 | 0.76 | 0.115174 |
Target: 5'- uGCCCCCgagacCgCCGCCC-CCCGGGGcggGCCu -3' miRNA: 3'- -CGGGGGa----G-GGCGGGcGGGCUCCa--UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 11006 | 0.76 | 0.115174 |
Target: 5'- gGCCCCggCUCGCCCGCCCGcucgcucgccGGGccgGCCg -3' miRNA: 3'- -CGGGGgaGGGCGGGCGGGC----------UCCa--UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 117919 | 0.76 | 0.126944 |
Target: 5'- cGCCgCCggaCCCGUCCGCCCggaGAGGggACCg -3' miRNA: 3'- -CGGgGGa--GGGCGGGCGGG---CUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 11509 | 0.75 | 0.136164 |
Target: 5'- uGCCCCCgcCCCGCCCgcggcacuccggGCCCGcgugagaGGGUACa -3' miRNA: 3'- -CGGGGGa-GGGCGGG------------CGGGC-------UCCAUGg -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 38405 | 0.75 | 0.13982 |
Target: 5'- cGCCCCCUCCgGCCUcCCCGGcuccGGgcCCu -3' miRNA: 3'- -CGGGGGAGGgCGGGcGGGCU----CCauGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 43965 | 0.75 | 0.150251 |
Target: 5'- cGCCCCgaCCCGCCCGCCUGcucUAUCa -3' miRNA: 3'- -CGGGGgaGGGCGGGCGGGCuccAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 37137 | 0.75 | 0.150251 |
Target: 5'- cGCCCCa-CUCGCCCGCgCCGGGccGCCa -3' miRNA: 3'- -CGGGGgaGGGCGGGCG-GGCUCcaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 11289 | 0.75 | 0.153882 |
Target: 5'- cGUCCCCguccCCCGCCCGCucucCCGGGccGCCg -3' miRNA: 3'- -CGGGGGa---GGGCGGGCG----GGCUCcaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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