Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29648 | 3' | -65.2 | NC_006151.1 | + | 1 | 0.7 | 0.292275 |
Target: 5'- cCCaCCC-CCCGCUC-CCCGGGG-GCCg -3' miRNA: 3'- cGG-GGGaGGGCGGGcGGGCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 706 | 0.66 | 0.53844 |
Target: 5'- -gCCCCUUCCG-UCGCaCCGGGGguCCg -3' miRNA: 3'- cgGGGGAGGGCgGGCG-GGCUCCauGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 2160 | 0.72 | 0.243219 |
Target: 5'- aGUCCCCgUCCuCGCCggggccggccccggCGCCCGAGGcccccgcggGCCg -3' miRNA: 3'- -CGGGGG-AGG-GCGG--------------GCGGGCUCCa--------UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 2468 | 0.68 | 0.415804 |
Target: 5'- aGCCCCCagCgGUUgGCCgCGcGGUGCCc -3' miRNA: 3'- -CGGGGGagGgCGGgCGG-GCuCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 4184 | 0.66 | 0.53844 |
Target: 5'- gGCCgucaCCUCCUcgaggcagGCggGCCCGAGGgcgGCCg -3' miRNA: 3'- -CGGg---GGAGGG--------CGggCGGGCUCCa--UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 5352 | 0.67 | 0.466412 |
Target: 5'- cGCCCUCUCCgGCgCgGCgCCGGcGGgGCUg -3' miRNA: 3'- -CGGGGGAGGgCG-GgCG-GGCU-CCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 5607 | 0.67 | 0.439852 |
Target: 5'- gGUCCCCUCCgGCggagggggcgccgCCGCCgCcGGGcGCCg -3' miRNA: 3'- -CGGGGGAGGgCG-------------GGCGG-GcUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 5781 | 0.66 | 0.528282 |
Target: 5'- cCCCCCUCgCGggggaccaucUCCGCggggcugCCGAGGgGCCg -3' miRNA: 3'- cGGGGGAGgGC----------GGGCG-------GGCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 6904 | 0.66 | 0.514547 |
Target: 5'- cGCCCacuuCCUCUCGCgucuacuuugcauguCCGgcCCCGAGGgcGCCa -3' miRNA: 3'- -CGGG----GGAGGGCG---------------GGC--GGGCUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 7019 | 0.67 | 0.466412 |
Target: 5'- gGCCCCCgcggcggccaUCUCgGCUCGCCCGG---GCCa -3' miRNA: 3'- -CGGGGG----------AGGG-CGGGCGGGCUccaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 7619 | 0.66 | 0.529202 |
Target: 5'- --aCCCUCCCGCgaCC-CCCGcGGUcGCCc -3' miRNA: 3'- cggGGGAGGGCG--GGcGGGCuCCA-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 7790 | 0.66 | 0.529202 |
Target: 5'- aGCCCggaCCCGCCCGgaCCCGgaaggaAGGaGCCg -3' miRNA: 3'- -CGGGggaGGGCGGGC--GGGC------UCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 8304 | 0.71 | 0.285976 |
Target: 5'- cGCCgCgUCCCGCCCcgagccCCCGGGGcgcgcggGCCu -3' miRNA: 3'- -CGGgGgAGGGCGGGc-----GGGCUCCa------UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 8710 | 0.67 | 0.483095 |
Target: 5'- cGUCUCCgUCuCCGCCguCGCCUcgguccgaggaggGGGGUGCCc -3' miRNA: 3'- -CGGGGG-AG-GGCGG--GCGGG-------------CUCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 8934 | 0.69 | 0.353836 |
Target: 5'- cGCCCCCgCCC-CCUGuCCCGGucccGGUcCCa -3' miRNA: 3'- -CGGGGGaGGGcGGGC-GGGCU----CCAuGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 9028 | 0.88 | 0.017304 |
Target: 5'- aCCCCCUCCCGCCCG-CCGGGGcGCCc -3' miRNA: 3'- cGGGGGAGGGCGGGCgGGCUCCaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 9106 | 0.71 | 0.267132 |
Target: 5'- cGCCCCCgaCCCGCCucgcacuCGCCCGAcacucgGCCc -3' miRNA: 3'- -CGGGGGa-GGGCGG-------GCGGGCUcca---UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 9170 | 0.71 | 0.273702 |
Target: 5'- cCCCCCUCcaCCGCCCGCCCuc---GCCc -3' miRNA: 3'- cGGGGGAG--GGCGGGCGGGcuccaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 9684 | 0.8 | 0.060397 |
Target: 5'- uCCCCCU-CCGCCCGgCCGcGGGUGCCc -3' miRNA: 3'- cGGGGGAgGGCGGGCgGGC-UCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 10547 | 0.72 | 0.244866 |
Target: 5'- cGCCCCgUUCCGCCCggcGCCCaauGGcgcgGCCg -3' miRNA: 3'- -CGGGGgAGGGCGGG---CGGGcu-CCa---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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