Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29648 | 3' | -65.2 | NC_006151.1 | + | 142274 | 0.66 | 0.520024 |
Target: 5'- cGCCCCgUCCCGgCgGCCaGAccgGCCg -3' miRNA: 3'- -CGGGGgAGGGCgGgCGGgCUccaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 141781 | 0.67 | 0.478676 |
Target: 5'- gGUUCUgUCCCGgggacgcgggucgguCCCGCCCcGAGGgcacggGCCg -3' miRNA: 3'- -CGGGGgAGGGC---------------GGGCGGG-CUCCa-----UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 141590 | 0.66 | 0.510909 |
Target: 5'- cCCCCCgggcgagagCCGCCCGgC-GAGGcUGCCg -3' miRNA: 3'- cGGGGGag-------GGCGGGCgGgCUCC-AUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 140022 | 0.71 | 0.273702 |
Target: 5'- gGCCgaCCUgCaCCGCCUGUuuGAGGUGCg -3' miRNA: 3'- -CGGg-GGA-G-GGCGGGCGggCUCCAUGg -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 139595 | 0.67 | 0.432304 |
Target: 5'- cGCCCCC-CCgagcggcgGCCCGUCCGGGcGcgGCUg -3' miRNA: 3'- -CGGGGGaGGg-------CGGGCGGGCUC-Ca-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 137652 | 0.73 | 0.20402 |
Target: 5'- cGCCCCCgUCCCggcggacgagcGCCCGCCgUGcGGcUGCCg -3' miRNA: 3'- -CGGGGG-AGGG-----------CGGGCGG-GCuCC-AUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 137416 | 0.74 | 0.181598 |
Target: 5'- gGCgCCCUCgCCG-CCGCCgCGGGGUccGCCu -3' miRNA: 3'- -CGgGGGAG-GGCgGGCGG-GCUCCA--UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 137267 | 0.72 | 0.234057 |
Target: 5'- cGCgCCCggugCCCGCgggcaCGCUCGAGGcgGCCa -3' miRNA: 3'- -CGgGGGa---GGGCGg----GCGGGCUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 136951 | 0.66 | 0.510909 |
Target: 5'- gGCgCCgUCCUGCgCCGCCUGcuGGagcugGCCg -3' miRNA: 3'- -CGgGGgAGGGCG-GGCGGGCu-CCa----UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 135057 | 0.67 | 0.475156 |
Target: 5'- uCCCCCUCCuCGucuuccCCCGCCuccucgggCGGGGgcggcgggGCCg -3' miRNA: 3'- cGGGGGAGG-GC------GGGCGG--------GCUCCa-------UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 134929 | 0.75 | 0.157593 |
Target: 5'- cUUCCCUCCCGCCCGCCCucuccGGcUACa -3' miRNA: 3'- cGGGGGAGGGCGGGCGGGcu---CC-AUGg -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 134406 | 0.68 | 0.389441 |
Target: 5'- aUCCCCUgCCCGCgCGagcuggugcugcccCCCGGGGgcGCCg -3' miRNA: 3'- cGGGGGA-GGGCGgGC--------------GGGCUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 132999 | 0.67 | 0.457752 |
Target: 5'- -aCUuuUCCCuUCCGCCCGgGGGUGCUc -3' miRNA: 3'- cgGGggAGGGcGGGCGGGC-UCCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 131607 | 0.68 | 0.399696 |
Target: 5'- cCCCCCUCCgGgCCgGCCCGcGGcuuuauacGCCc -3' miRNA: 3'- cGGGGGAGGgC-GGgCGGGCuCCa-------UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 129519 | 0.67 | 0.475156 |
Target: 5'- aGCCgCUUgCCGCCgacggggggGCCCGGGGccGCCg -3' miRNA: 3'- -CGGgGGAgGGCGGg--------CGGGCUCCa-UGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 128525 | 0.66 | 0.519109 |
Target: 5'- cGCCCgagCCCgaggccacggcggGCCCGCCgGcgcGGUGCCg -3' miRNA: 3'- -CGGGggaGGG-------------CGGGCGGgCu--CCAUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 127786 | 0.71 | 0.267132 |
Target: 5'- uCCCCCUCCCcCgCCGCCgcgcgcgggggcgCGAGGU-CCu -3' miRNA: 3'- cGGGGGAGGGcG-GGCGG-------------GCUCCAuGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 125245 | 0.71 | 0.279786 |
Target: 5'- cGCUCCC-CCgGCCCggcggggacGCCCGAGccGCCg -3' miRNA: 3'- -CGGGGGaGGgCGGG---------CGGGCUCcaUGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 125209 | 0.71 | 0.273702 |
Target: 5'- gGCCCCgCggccCCCGCggCCGCCCGucGGgcCCg -3' miRNA: 3'- -CGGGG-Ga---GGGCG--GGCGGGCu-CCauGG- -5' |
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29648 | 3' | -65.2 | NC_006151.1 | + | 124664 | 0.73 | 0.190293 |
Target: 5'- uCCCCCUUCUacgGCCUGCgCGAGGggGCCc -3' miRNA: 3'- cGGGGGAGGG---CGGGCGgGCUCCa-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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