Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29648 | 5' | -56.8 | NC_006151.1 | + | 9695 | 0.69 | 0.670017 |
Target: 5'- cCGGcCGCGGGugcCCGGGAGACGGgaGCGAa -3' miRNA: 3'- uGCU-GUGCUC---GGCCUUCUGCCa-CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 65170 | 0.69 | 0.670017 |
Target: 5'- uGCGGCgcGCGAGgCGGAAGcGCGGguccGCGAg -3' miRNA: 3'- -UGCUG--UGCUCgGCCUUC-UGCCa---CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 123614 | 0.7 | 0.639212 |
Target: 5'- gGCGAuauaucCGCGAGCUGGugcuGGCGGuUGCAGu -3' miRNA: 3'- -UGCU------GUGCUCGGCCuu--CUGCC-ACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 130291 | 0.7 | 0.639212 |
Target: 5'- -gGGCGCGcGCCGGccGACGGcGCGGa -3' miRNA: 3'- ugCUGUGCuCGGCCuuCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 31388 | 0.7 | 0.639212 |
Target: 5'- cCGGCACcaAGCCGGggGGcCGGgGCGAg -3' miRNA: 3'- uGCUGUGc-UCGGCCuuCU-GCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 110738 | 0.7 | 0.618633 |
Target: 5'- cACGcaACACgcuaGAGUCGaGAGGAUGGUGCAAc -3' miRNA: 3'- -UGC--UGUG----CUCGGC-CUUCUGCCACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 103771 | 0.71 | 0.598095 |
Target: 5'- gGCGcuGCGCGAGUCGGAGcgcuGGCGGcgcUGCAGg -3' miRNA: 3'- -UGC--UGUGCUCGGCCUU----CUGCC---ACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 5092 | 0.71 | 0.557378 |
Target: 5'- cGCGGCGgGcGCCGGcgGAGACGGUgGCGg -3' miRNA: 3'- -UGCUGUgCuCGGCC--UUCUGCCA-CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 10200 | 0.72 | 0.527365 |
Target: 5'- cGCGGCGCGGGCggCGGcugcaGAGGCGGcUGCGGa -3' miRNA: 3'- -UGCUGUGCUCG--GCC-----UUCUGCC-ACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 82757 | 0.72 | 0.517491 |
Target: 5'- gACGACGCGGGCaUGGu-GACGGgcacgGCAAa -3' miRNA: 3'- -UGCUGUGCUCG-GCCuuCUGCCa----CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 137143 | 0.72 | 0.507693 |
Target: 5'- cGCGACGCGGcGCCGGA-GAUGGccGCGc -3' miRNA: 3'- -UGCUGUGCU-CGGCCUuCUGCCa-CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 89169 | 0.72 | 0.497974 |
Target: 5'- gGCGAgGCGGGCgCGGggGuCGGggGCGGa -3' miRNA: 3'- -UGCUgUGCUCG-GCCuuCuGCCa-CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 112033 | 0.72 | 0.497974 |
Target: 5'- gGCGggaGCugGGGCCGGcGGGCGGgcgGCGg -3' miRNA: 3'- -UGC---UGugCUCGGCCuUCUGCCa--CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 46634 | 0.73 | 0.488339 |
Target: 5'- uGCGACGCG-GCCGGAcGGGCGGacagGCc- -3' miRNA: 3'- -UGCUGUGCuCGGCCU-UCUGCCa---CGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 78612 | 0.73 | 0.459981 |
Target: 5'- aGCGACGCGGagacgaacgcGCCGGAcgccGACGcGUGCGAg -3' miRNA: 3'- -UGCUGUGCU----------CGGCCUu---CUGC-CACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 123152 | 0.73 | 0.450724 |
Target: 5'- aGCGGCGCGAGCUGGAgaAGACccUGCGc -3' miRNA: 3'- -UGCUGUGCUCGGCCU--UCUGccACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 134807 | 0.73 | 0.44157 |
Target: 5'- gGCGGCcCGcGCCGGAcccGGACGGUGgCGAc -3' miRNA: 3'- -UGCUGuGCuCGGCCU---UCUGCCAC-GUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 21386 | 0.73 | 0.44157 |
Target: 5'- -gGGCACGAcgGCCGGcggggcgaaGGGGCGGUGCGg -3' miRNA: 3'- ugCUGUGCU--CGGCC---------UUCUGCCACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 98950 | 0.74 | 0.432522 |
Target: 5'- gGCGGCGCGGGCCGuGGacgAGGCGGcGCu- -3' miRNA: 3'- -UGCUGUGCUCGGC-CU---UCUGCCaCGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 130860 | 0.74 | 0.396591 |
Target: 5'- gGCGGCGCGGGCgGGAccgcaguGGGCGGcgGCGGu -3' miRNA: 3'- -UGCUGUGCUCGgCCU-------UCUGCCa-CGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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